Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3345 122 6e-22 >seq3345 Length=67807 Score = 122 bits (134), Expect = 6e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||||||||| ||||| ||||||||||||||| ||||| | ||||| |||||||| || Sbjct 25931 GCAGTAATTACGGTTCCTGCATATTTTAATGATGCTCAAAGGCAAGCTACTAAAGACGCT 25872 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||| || ||| | | ||| | ||||||||||| || || ||||| || | ||| Sbjct 25871 GGTAAAATCGCTGGTTTAGAAGTTCTTCGTATTATTAACGAGCCCACAGCCGCATCTCTT 25812 Query 474857 GCTTATGGTCTTGATAAGAA 474876 |||||||| | ||||| || Sbjct 25811 TCTTATGGTTTAGATAAAAA 25792 Score = 114 bits (126), Expect = 8e-20 Identities = 137/184 (74%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 476034 AAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTA 476093 ||||||||||| || || | |||||||| || | || || ||||||| | || |||| Sbjct 25033 AAGGTGAAAGAGAACTCGCGAAAGATAACAAGAGTCTAGGCACTTTTAGGTTAGATGGTA 24974 Query 476094 TTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATG 476153 || |||| || | ||||| || || ||||| |||||||| ||||||||||| ||||| | Sbjct 24973 TTGCTCCAGCGGCAAGAGGTGTGCCACAAATCGAAGTTACATTTGATATTGACGCAAACG 24914 Query 476154 GTATTCTTAATGTTACTGCTTGTGATAA---ATCTAGT-AACAAGAGTAAAAATATAACT 476209 |||| ||| |||||||| ||||| | ||| | ||||| ||| ||||||| Sbjct 24913 GTATCCTTTCCGTTACTGCAAAGGATAAGGCAACTAATAAACAACAGT----CTATAACT 24858 Query 476210 ATTA 476213 |||| Sbjct 24857 ATTA 24854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268032842764976