Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq3345 812 0.0 seq2756 82.4 8e-11 >seq3345 Length=67807 Score = 812 bits (900), Expect = 0.0 Identities = 788/1009 (78%), Gaps = 8/1009 (1%) Strand=Plus/Minus Query 160866 CTGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTT 160925 |||||| || || || ||| |||| || || ||| | || || |||||||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 160926 CGGCGTCCTGATGATTCCCTGCT-TGCTCGCTGCTACCATTTG---TTTCATCATTGCCT 160981 ||| || ||| |||||| || | || | |||| ||| || | | ||||| | Sbjct 46366 CGGTTGTCTAATG-TTCCCTACTCTACTTACAGCTA---TTTCAGCTTACGTTATTGCTT 46311 Query 160982 TCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCA 161041 | | | || || || || || ||||| || || ||||| || || |||||||| || Sbjct 46310 TTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTAC 46251 Query 161042 TGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGC 161101 | || |||||||||||||||||||||||||| | || ||| |||||||||||| | | Sbjct 46250 TTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTC 46191 Query 161102 ACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTT 161161 |||||||||| ||||||||||| || | || || ||||| |||||||||||| ||| Sbjct 46190 ACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTT 46131 Query 161162 TCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGG 161221 |||||| ||||| ||||||||| | ||||| | | ||||||||| ||||||||||||| Sbjct 46130 ACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGG 46071 Query 161222 AACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCG 161281 | |||||||||||||| || |||||||| ||||| || || || | ||| ||||| || | Sbjct 46070 AGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAG 46011 Query 161282 CTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAA 161341 ||||||| |||||| ||| | |||| || ||||||||||||||||||| |||| | Sbjct 46010 CTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTA 45951 Query 161342 TGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACA 161401 ||||||| || ||||||||||| ||||||| ||||||||| |||||||| |||||||||| Sbjct 45950 TGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACA 45891 Query 161402 TTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCA 161461 | || |||||||| ||||| ||||| || || || ||||| || || |||||||| ||| Sbjct 45890 TCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCT 45831 Query 161462 GTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGT 161521 || ||||||||||| || || || || || || | |||||||| || || ||||| | Sbjct 45830 CAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAAT 45771 Query 161522 CCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCC 161581 | ||||| ||||||||||||||||||||||||||||| |||||||||||||| || | Sbjct 45770 CTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTC 45711 Query 161582 ACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGC 161641 |||| ||||| |||||||| | |||||||||||||| ||||||||||| || | || | Sbjct 45710 ACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTC 45651 Query 161642 ACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCA 161701 ||||| |||| | ||||||||| || ||||| |||||||| || | |||| ||| | Sbjct 45650 ACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTA 45591 Query 161702 CCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTA 161761 | |||||||||||||| || |||||||||||||||||||| | || ||| || ||| Sbjct 45590 CTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTC 45531 Query 161762 AAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGC 161821 || |||||||| ||||| ||| |||| |||||| | || || |||||||| |||| Sbjct 45530 GTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGC 45471 Query 161822 ACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAGTC 161870 ||||||| || ||||||||||||||||| || || ||||||| |||||| Sbjct 45470 ACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 673 bits (746), Expect = 0.0 Identities = 769/1029 (75%), Gaps = 3/1029 (0%) Strand=Plus/Plus Query 162103 CAAGAAGGGGGTGGTTT-GATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTT 162161 ||||| | |||| || ||| | |||| |||||||| || | |||||||||||||| Sbjct 59778 CAAGATCGTGGTGTATTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTC 59837 Query 162162 GTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTT 162221 ||||| ||||||||||||||||| || || ||| | || ||| | || |||||||| Sbjct 59838 GTTGGATGGTCTGGACTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTA 59897 Query 162222 ACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAG 162281 ||||| | ||||||||| || |||||| |||||||| || || ||||| | || || Sbjct 59898 ACTGGTATTACTTTCGTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAA 59957 Query 162282 GGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTT 162341 || ||||| || ||||| || || |||||||| || || ||||||||| || || Sbjct 59958 GGATGTAACTTCCTAACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTA 60017 Query 162342 CTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGA 162401 || ||| | ||||| ||||| | ||||| ||| ||| || |||| |||| |||| || Sbjct 60018 CTACTTATCTGGGGACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGT 60077 Query 162402 CTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAG 162461 || ||| ||||| | || || ||||| | |||| | || |||||| ||| | ||| Sbjct 60078 CTTTGGGCTTTTATTGCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAG 60137 Query 162462 TTTGAACTGGCACGACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCT 162521 ||||| | || || | | ||||||||||||||||| || || |||||||| ||||| Sbjct 60138 TTTGAGATCGCTCGTTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCA 60197 Query 162522 ATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTC 162581 || || |||||||||| ||||| || | || ||||| || ||| | |||||||| Sbjct 60198 ATCGCCGTATTCGTTACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTT 60257 Query 162582 GCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCAT 162641 ||||| || || || || ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 60258 GCACCAAGTTTTGGTGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCAC 60317 Query 162642 AACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTG 162701 |||||||| || || || || ||||||||||||||||| ||||||||||||||||| || Sbjct 60318 AACTGGACTCTTAACCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTA 60377 Query 162702 CTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCA 162761 || | |||||||||||| | ||| || || || || || | ||||||||| || || Sbjct 60378 CTATGTGCTATTCATGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCG 60437 Query 162762 AACACTTTTAAAGCATTTGACTCC-ACACAGGAGGAAGAAACGTATTCGATGGTTACTGC 162820 |||||||| ||| || ||||| ||||| ||||| || || || ||||||||||| Sbjct 60438 AACACTTTCCGTGCA-TTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGC 60496 Query 162821 GAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTT 162880 ||||| |||||||| |||||||| ||| |||| || ||||||||||||||| || || Sbjct 60497 AAACCGTTTCTGGTCTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTT 60556 Query 162881 CTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACT 162940 ||| ||||| || || || || ||| | ||||||||| | ||||||||| | || | Sbjct 60557 CTTCATGCTTTTCGTACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTT 60616 Query 162941 CGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCC 163000 || || || || ||||| ||||| || || || ||||| || | || ||||||||||| Sbjct 60617 AGCACTAAACCTGCGTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCC 60676 Query 163001 TGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTT 163060 ||| || || || ||||| || || |||| ||||| |||||||| | || || ||| | Sbjct 60677 TGAATTCGAAACATTCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGAT 60736 Query 163061 AGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGG 163120 || || || ||||||||||| ||||| | |||||||| ||||| | ||| | || Sbjct 60737 GGCTGCACAAGATCAACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGG 60796 Query 163121 CAACGCTCT 163129 ||||| || Sbjct 60797 AAACGCCCT 60805 >seq2756 Length=33385 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157689 ACGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGA 157748 ||||| |||||||||| |||||||||| ||| ||||||||| ||||||||||| | Sbjct 5371 ACGGGATGTAGCGCAGTTTGGTAGCGCATCTGCCTTGGGAGCAGGGTGTCGCAGGTTCAA 5430 Query 157749 ATCCTGTCACCCCGA 157763 ||||||||| ||||| Sbjct 5431 ATCCTGTCATCCCGA 5445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547723838581920