Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3345 558 1e-154 >seq3345 Length=67807 Score = 558 bits (618), Expect = 1e-154 Identities = 700/958 (73%), Gaps = 2/958 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| |||||||| ||||| |||||||||||||||||||| | || ||||| Sbjct 45433 AGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACCTAGGTT 45492 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 | | ||| || | ||||||||| || | || | ||| | |||||| || Sbjct 45493 TGAACGGTTAAGAATGTCAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGA 45552 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 |||||||||||||| || || || || || |||||||| | | |||||||| || | Sbjct 45553 CTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCCATAGTAGCTACACCCATAGATGTTAA 45612 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGA-CTCCTGCTATTGTTAA 18072 ||| || | | || ||||||||| | | || ||| || || | | || ||||| | Sbjct 45613 CCAGATACCAACTACTGGCCAAGCACCTAGGACGAAGTGAAGTGCACGTGAG-TTGTTGA 45671 Query 18073 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACG 18132 | ||| || ||||||| || | || ||||| || ||||| ||||| || || || | Sbjct 45672 ATGAAGCGTATTGGAAGAATAGACGACCTAAGTAACCGTGAGCTGCAACGATGTTGTAAG 45731 Query 18133 TCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTC 18192 ||||||||||||| || || || || || ||||| ||| || |||||| ||||| | Sbjct 45732 TCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTAGCAGATTCGTTCTCAGTAGTTTCAC 45791 Query 18193 TAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATA 18252 || || || ||||| || ||| ||||||||||| | ||||| || |||||||||| Sbjct 45792 GGATTAGAGATGAAGTTACTAGAGAACCGTGCATAGCTGAGAATAGAGAACCACCGAATA 45851 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || |||||||| ||||| ||||| || ||||||||||| ||||| || |||||||||| Sbjct 45852 CACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATA 45911 Query 18313 CGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 18372 | | |||||| ||||||||||| ||||| |||||||||||||| |||||| |||| Sbjct 45912 CAAGCATGAAGTTGAAAGTACCAGAGATACCTAGAGGCATACCATCTGAGAAAGAACCTT 45971 Query 18373 GTCCAAAAGGATAAACGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCAA 18432 | || | || || | | ||||||| | || || |||||||| || || |||||| Sbjct 45972 GACCGATTGGGTAGATTACGAATACTGCAGATGCTGCAGCTACTGGAGCTGAGAAAGCAA 46031 Query 18433 CACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAG 18492 |||| ||||| || ||||||||||| | ||| ||| ||||| | || || ||||||| Sbjct 46032 CACAGATCCATGGACGCATACCTAGACGGTAAGAAAGCTCCCACTCACGACCGATGTAAG 46091 Query 18493 CTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACC 18552 | | || |||| |||||||| |||| ||||| || | || ||||| |||| || Sbjct 46092 CACATACACCAATGAAGAAGTGGAAAACAACTAGTTGGTAAGTACCACCGTTGTATAGCC 46151 Query 18553 ACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATG 18612 |||| |||| | |||||||||||||||||||||||||||| |||||| ||||| || Sbjct 46152 ACTCATCGATTGAAGCAGCTTCCCAGATTGGGTAGAAGTGAACACCGATAGCGTTTGAAC 46211 Query 18613 ACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCT 18672 || || | || || || |||||||||||||| || |||| | || | || |||| Sbjct 46212 TTGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAAAGTAGAGAACCAGCAACTGGCT 46271 Query 18673 CACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAG 18732 |||| |||||||| || || || ||||| || || | ||| ||||| | | |||| | Sbjct 46272 CACGGATACCATCGATATCTACTGGAGGTGCTGCGATAAAAGCAATAACGTAAGCTGAAA 46331 Query 18733 CTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || || | || | ||||| ||| || || ||||| || | ||| || | ||| Sbjct 46332 TAGCTGTAAGTAGAGTAGGGAACATTAGACAACCGAACCAACCAATGTATAGTCTGTT 46389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151312268956728