Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3345 749 0.0 >seq3345 Length=67807 Score = 749 bits (830), Expect = 0.0 Identities = 776/1021 (76%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 103148 AGTGCAACGGGGGTAGACTCTGCAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGC 103207 || ||||| || |||||| ||||||| || || || ||||||||||||||||||||| Sbjct 45407 AGAGCAACTGGTAGAGACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGC 45466 Query 103208 TCGTGCATGACTTCCATACCCAGACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAAC 103267 |||||||| ||||||||||| || | ||||| |||| ||| ||||| ||||| | Sbjct 45467 TCGTGCATAACTTCCATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGTGTTGATT 45526 Query 103268 ACACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCC 103327 |||||||| || ||| | | ||||||||||||||||| ||||| |||||||| ||| Sbjct 45527 ACACGACCTTGTGAATCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCC 45586 Query 103328 ATGGT-GCTAACACCAAGTGCGGTGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNN 103386 || || |||| |||| | | || ||||||||||| |||||||| Sbjct 45587 ATAGTAGCTA-CACCCATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGAC 45645 Query 103387 NNNNNNNNNNNNNNGGGAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTA 103446 | |||||||||||||| ||||||||||||| | |||||| ||||| Sbjct 45646 GAAGTGAAGTGCACGTGAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTA 45705 Query 103447 ACCATGAGCGGCTACGATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTT 103506 ||| ||||| || ||||||||||| |||||||| ||||| |||||||||||||| ||||| Sbjct 45706 ACCGTGAGCTGCAACGATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTT 45765 Query 103507 TTGAGATTCAGTTTCAGTCGTCTCACGAACCAGCGAGGACGTAACAAGCGAACCGTGCAT 103566 |||||| | ||||| || ||||| | || || || || || || ||||||||||| Sbjct 45766 AGCAGATTCGTTCTCAGTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCAT 45825 Query 103567 AGCACTGAACAGTGAACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCAT 103626 ||| ||| || ||||||||||| || |||||||| || ||||||||||| |||||||| Sbjct 45826 AGCTGAGAATAGAGAACCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCAT 45885 Query 103627 GAGAATGTTATGTTCGGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAA 103686 || ||||| || || |||||||| || |||||| ||||||| || || || ||||| | Sbjct 45886 AAGGATGTTGTGCTCAGCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAG 45945 Query 103687 AGGCATAGCATCGGAGAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGC 103746 ||||||| |||| ||||| ||||||||||| | ||||||| | ||||||||| || || Sbjct 45946 AGGCATACCATCTGAGAAAGAACCTTGACCGATTGGGTAGATTACGAATACTGCAGATGC 46005 Query 103747 AGCCGCAACAGGAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGA 103806 || || || ||||| ||| | || ||||||||||| || ||||| || |||||||| || Sbjct 46006 TGCAGCTACTGGAGCTGAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGA 46065 Query 103807 CAATTCCCACTCACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAG 103866 | ||||||||||| || || || ||| | | ||||||| ||||||||| || || || Sbjct 46066 AAGCTCCCACTCACGACCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAG 46125 Query 103867 TTGGAAAGGACCACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATA 103926 |||| ||| ||||||||| || ||||||||||| | || || |||||||| || || || Sbjct 46126 TTGGTAAGTACCACCGTTGTATAGCCACTCATCGATTGAAGCAGCTTCCCAGATTGGGTA 46185 Query 103927 GAAGTGAAGACCAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACC 103986 |||||||| ||| || ||||| || ||||| || |||||||||||||||||||| || Sbjct 46186 GAAGTGAACACCGATAGCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCC 46245 Query 103987 GTACATGAGTGAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGC 104046 ||| | || |||||||| || || ||||| || || |||||||| || ||||||||||| Sbjct 46246 GTAAAGTAGAGAACCAGCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGC 46305 Query 104047 TACGAAAGCAACGATG-AAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACAC 104105 | ||||||| | | |||| || | || | | ||||| |||| ||| || || Sbjct 46306 GATAAAAGCAATAACGTAAGCTGA-AATAGCTGTAAGTAGAGTAGGGAACATTAGACAAC 46364 Query 104106 CGAACCAACCAACATAGAGACGGTTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCC 104165 |||||||||||| || || | ||| | || || || | ||| ||||||| | |||| Sbjct 46365 CGAACCAACCAATGTATAGTCTGTTCTCAGTTGAAGTGATCCATGCGCAGAATTGCTCCC 46424 Query 104166 A 104166 | Sbjct 46425 A 46425 Score = 641 bits (710), Expect = 5e-179 Identities = 746/1003 (74%), Gaps = 4/1003 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 || ||||| || | ||| | |||||| ||||| || | ||||||||||| |||||||| Sbjct 60805 AGGGCGTTTCCACGTGGTAGTACCTCCTCAGGGAAGATGAAGTTTTCATGAGGTTGATCT 60746 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 || |||| ||| ||||| | ||||||||| | ||| |||| || |||||||| || Sbjct 60745 TGTGCAGCCATCCACGCACGGATACCTTCATTTAGAAGGTTGTTTTTCGTGTAGAATGTT 60686 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 ||||| || || |||||||| ||||| | |||||| || || || || || ||||| ||| Sbjct 60685 TCGAATTCAGGGTCTTCTGCGGCTCTAAGCTCTTGCGAAACGAAATCGTATGCACGCAGG 60626 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || || || | ||| | ||||||||| | ||||||||||| ||| || || || || Sbjct 60625 TTTAGTGCTAAACCTACAATACCGATCGCACTTGTCCACATACCAGCTACTGGTACGAAA 60566 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 ||||| ||||| || ||||| | ||| ||| ||||||| |||||| || ||||||||| Sbjct 60565 AGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAATGCAACACCAAAAATCTGAGACCAG 60506 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 ||||||||||| ||||||||||| ||||||||||| |||||| | | |||||| | Sbjct 60505 AAACGGTTTGCAGTAACCATTGAGTAAGTCTCTTCTGATTGTGTTGGAGTGAATGCACGG 60446 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 |||||||| || |||||||||||| | ||||||||||| ||||| |||| || || Sbjct 60445 AAAGTGTTCGCAGCATCACCATCTTCGAAAAGAGTGTTCTCTACAGTCGCACCATGAATA 60386 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || | || || || |||||||| || || |||||||| ||||||||||| || Sbjct 60385 GCACATAGTAAGGCACCACCAAGGATACCAGCTACGCCCATCATGTGGAATGGGTTAAGA 60326 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||||||| ||||| || |||||||| || ||||| | || || || || |||||||| Sbjct 60325 GTCCAGTTGTGGAAACCTTGTAGGAAAAGAAGGAAACGGAAAATTGCCGCTACACCAAAA 60266 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || |||||||||||||| | || || | ||| || | || || || | || || Sbjct 60265 CTTGGTGCAAAGAACCAACTTGCTTGACCTAAAGGGTAAACTAGGAAAACTGTAACGAAT 60206 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 || ||||| || |||||||| || || || ||||| |||||||| || | ||| | ||| Sbjct 60205 ACGGCGATTGGACCAGAGAAAGCGATTGCGTTGTAAGGACGAATACCTACTAAACGAGCG 60146 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | ||| || || | ||| ||||||||| | |||| | |||||| || || | |||| Sbjct 60145 ATCTCAAACTGTCTAAGACAGAAACCAATTACACCAAACGAACCGTGTAGTGCAATAAAA 60086 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||||| || || |||| ||||| ||| | || || ||||| |||||||| ||||| Sbjct 60085 GCCCAAAGACCACCAATTTGGAACCAACGAGTGATGTCACCTTGTGCTTCAGGTCCCCAG 60026 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 | || || || || ||||||||| || |||||| || || |||||||| || ||||| Sbjct 60025 ATAAGTAGTAGTGAGTGACCCATACTGTTAGCAGGAGTAGATACAGCAGCAGTTAGGAAG 59966 Query 102550 TTAGCACCTTCAAGGTAACTAGAC--GCAAGCCCGTGGGTATACCAGGAAGTAGCAAACG 102607 ||| ||||| ||| ||| | || || || ||||| || ||||| || || | || | Sbjct 59965 TTACATCCTTCTAGG-AACGA-ACTTGCTAGACCGTGAGTGTACCAAGATGTTACGAAAG 59908 Query 102608 TCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAG 102667 | | ||||| ||||| || || | || || | ||| || || ||||| ||||||| Sbjct 59907 TAATACCAGTTAGCCAACCACCTACAGCTAGGAATGCACATGGGAATAGAAGAAGTCCAG 59848 Query 102668 ACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATC 102710 |||| || || || || || || || || || | ||||||||| Sbjct 59847 ACCATCCAACGAAAACGAAACGGTCACGCTTTAGCCAGTCATC 59805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633486580644960