Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3345 872 0.0 >seq3345 Length=67807 Score = 872 bits (966), Expect = 0.0 Identities = 798/1005 (79%), Gaps = 2/1005 (0%) Strand=Plus/Plus Query 26722 GACTCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCT 26781 |||||| ||||||| ||||| | || || || || ||||| | ||||| || || || Sbjct 45422 GACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCC 45481 Query 26782 AATCCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAA 26841 | || || | |||||| |||| ||| ||||||||||||| |||||||| |||||| Sbjct 45482 ATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGTGTTGATTACACGACCTTGTGAA 45541 Query 26842 TCAATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCA 26901 || | || ||||| ||||||||||||||||| || ||||| ||||| || | |||||| Sbjct 45542 TCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCCATAGTAGCTACACCC 45601 Query 26902 AGTGCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGT 26961 | | || |||||||| ||||| || ||||| ||| | |||| |||||| | | |||| Sbjct 45602 ATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGACGAAGTGAAGTGCACGT 45661 Query 26962 GAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACG 27021 ||||||||||||||||| |||||||||| | |||||| ||||| || || ||||| ||| Sbjct 45662 GAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTAACCGTGAGCTGCAACG 45721 Query 27022 ATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCA 27081 |||||||| ||||||||||||||||||||||| ||||| ||||| || || | ||| Sbjct 45722 ATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTAGCAGATTCGTTCTCA 45781 Query 27082 GTCGTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGAT 27141 || || ||||||| || || || || || ||| ||||||||||| ||||| ||||| Sbjct 45782 GTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCATAGCTGAGAATAGAGAA 45841 Query 27142 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCT 27201 ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| || Sbjct 45842 CCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 45901 Query 27202 GCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAG 27261 || ||||||||||||||| |||| ||||||||||||||||| ||||||||| |||| ||| Sbjct 45902 GCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAGAGGCATACCATCTGAG 45961 Query 27262 AAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCA 27321 |||||||||||||||| || |||| | |||||||||| || ||||| |||||||| Sbjct 45962 AAAGAACCTTGACCGATTGGGTAGATTACGAATACTGCAGATGCTGCAGCTACTGGAGCT 46021 Query 27322 GAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGT 27381 || | || ||||||||||||||||||||||||| ||| || || || ||||||||||| Sbjct 46022 GAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGAAAGCTCCCACTCACGA 46081 Query 27382 CCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCG 27441 || || |||||| | | || || | ||||||||| || || |||||| ||| ||||||| Sbjct 46082 CCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAGTTGGTAAGTACCACCG 46141 Query 27442 TTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATT 27501 || || | ||||||||||| ||| || ||||||||||||||||||||||| | |||||| Sbjct 46142 TTGTATAGCCACTCATCGATTGAAGCAGCTTCCCAGATTGGGTAGAAGTGAACACCGATA 46201 Query 27502 GCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCA 27561 || ||||||||||| || || |||||||| ||||||||||| || || | || |||||| Sbjct 46202 GCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAAAGTAGAGAACCA 46261 Query 27562 GCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATG 27621 ||||| || ||||| ||||| || ||||| || || ||||||||||| || || | || | Sbjct 46262 GCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATAAAAGCAATAACG 46321 Query 27622 -AAGCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATA 27680 |||| || | | |||| | || || |||| ||| || |||||||||||||| || Sbjct 46322 TAAGCTGA-AATAGCTGTAAGTAGAGTAGGGAACATTAGACAACCGAACCAACCAATGTA 46380 Query 27681 CAAACGGTTGTTAGTTGATGTCACCCACTCACAGAAATTCTGCCA 27725 | | ||| | |||||| || | ||| | ||||| | || ||| Sbjct 46381 TAGTCTGTTCTCAGTTGAAGTGATCCATGCGCAGAATTGCTCCCA 46425 Score = 452 bits (500), Expect = 5e-122 Identities = 685/966 (71%), Gaps = 8/966 (1%) Strand=Plus/Minus Query 23430 AAGTTTTCGTGTGGTTGGTCAATAGT-CATC-ATCCATTCACGGAGGCCATTGTTCAACA 23487 |||||||| || ||||| || | || || | ||||| |||||| || | || | | Sbjct 60766 AAGTTTTCATGAGGTTGATC--TTGTGCAGCCATCCACGCACGGATACCTTCATTTAGAA 60709 Query 23488 AAATATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGAC 23547 | |||||||||||||| || || | | ||||| || || | || |||||| Sbjct 60708 GGTTGTTTTTCGTGTAGAATGTTTCGAATTCAGGGTCTTCTGCGGCTCTAAGCTCTTGCG 60649 Query 23548 TCACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCC 23607 || ||||| || ||||| || || || || | || | || || || | | || Sbjct 60648 AAACGAAATCGTATGCACGCAGGTTTAGTGCTAAACCTACAATACCGATCGCACTTGTCC 60589 Query 23608 AAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACG 23667 | | ||| || || || || | ||| |||||||| ||||||||||| || || | Sbjct 60588 ACATACCAGCTACTGGTACGAAAAGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAATG 60529 Query 23668 CAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCT 23727 |||| || || || || ||||| ||||| ||||| |||||||| || || ||||| || Sbjct 60528 CAACACCAAAAATCTGAGACCAGAAACGGTTTGCAGTAACCATTGAGTAAGTCTCTTCTG 60469 Query 23728 CCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTAT 23787 || || | | ||| || |||||||| || || |||||||| | || || | Sbjct 60468 ATTGTGTTGGAGTGAATGCACGGAAAGTGTTCGCAGCATCACCATCTTCGAAAAGAGTGT 60409 Query 23788 TCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTC 23847 |||| ||||| | |||||||||||| | || | || || || || |||||||| || | Sbjct 60408 TCTCTACAGTCGCACCATGAATAGCACATAGTAAGGCACCACCAAGGATACCAGCTACGC 60349 Query 23848 CCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACC 23907 ||||||| ||||| ||||| || |||||||| || || || || ||||| |||||||| | Sbjct 60348 CCATCATGTGGAATGGGTTAAGAGTCCAGTTGTGGAAACCTTGTAGGAAAAGAAGGAAAC 60289 Query 23908 TGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGAT 23967 |||||| ||||| ||||| ||||| || |||||||||||| || || || ||||| | Sbjct 60288 GGAAAATTGCCGCTACACCAAAACTTGGTGCAAAGAACCAACTTGCTTGACCTAAAGGGT 60229 Query 23968 AGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGG 24027 | | ||||| || | |||||||| || || |||||||| ||||| || || ||||| | Sbjct 60228 AAACTAGGAAAACTGTAACGAATACGGCGATTGGACCAGAGAAAGCGATTGCGTTGTAAG 60169 Query 24028 GACGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATA-AAACCTATAAGTGCA 24086 |||| || || | || ||| || | |||||||| | ||| | | ||||| || | || Sbjct 60168 GACGAATACCTACTAAACGAGCGATCTCAAACTGTC-TAAGACAGAAACCAATTACACCA 60110 Query 24087 AAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAG 24146 || | |||||| || |||| ||| | |||||| || |||| ||||| ||| || | | Sbjct 60109 AACGAACCGTGTAGTGCAATAAAAGCCCAAAGACCACCAATTTGGAACCAACGAGTGATG 60050 Query 24147 TCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGC 24206 || ||||| | ||||| ||||| | || || || || ||||||||| || |||||| Sbjct 60049 TCACCTTGTGCTTCAGGTCCCCAGATAAGTAGTAGTGAGTGACCCATACTGTTAGCAGGA 59990 Query 24207 GTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGG 24266 || || ||||| || || || |||||| || || || | ||||| || || || || Sbjct 59989 GTAGATACAGCAGCAGTTAGGAAGTTACATCCTTCTAGGAACGAACTTGCTAGACCGTGA 59930 Query 24267 GTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCA 24326 ||||||||| || || |||| | ||||| |||||||| || | || || | ||| Sbjct 59929 GTGTACCAAGATGTTACGAAAGTAATACCAGTTAGCCAACCACCTACAGCTAGGAATGCA 59870 Query 24327 G-TGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCA 24385 |||||| | | || ||||||||||| || || || || || || || || || | ||| Sbjct 59869 CATGGGAATA-GAAGAAGTCCAGACCATCCAACGAAAACGAAACGGTCACGCTTTAGCCA 59811 Query 24386 GTCGTC 24391 ||| || Sbjct 59810 GTCATC 59805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665466016663840