Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq3345 783 0.0 seq2756 104 3e-17 >seq3345 Length=67807 Score = 783 bits (868), Expect = 0.0 Identities = 773/996 (78%), Gaps = 2/996 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 ||||||| |||| | || || | ||| | || || | |||||||| ||| || Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTT-CATCGTCGCCTTCATCGCTGCTCC 165887 ||| | || ||||| | |||| | | || |||| | | | || || ||||| || || Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACC 46298 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || ||||| || |||||||| || || ||||||||||| | || || ||||| Sbjct 46297 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAA 46238 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 ||||||||||||||| || ||||| ||| ||||| || ||| | |||||||| || || Sbjct 46237 CATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAAT 46178 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 ||||||||| || || | || || ||||| || ||||||||| ||| |||||| ||||| Sbjct 46177 CTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGT 46118 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 ||||||||| | ||||| | | ||| ||||| |||||||||||||| || |||||||| Sbjct 46117 TTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCG 46058 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 |||||||||||||||||||||||||||||||| |||||| ||||| ||||| || ||| Sbjct 46057 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 45998 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 ||||||| || | || || ||||||||||| |||||| |||| ||||| || || || Sbjct 45997 AGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTAT 45938 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 ||| || || ||||||| |||| | || ||||||||||||||||| || || ||||| || Sbjct 45937 CTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 45878 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 ||||| ||||| || |||||||| ||||| ||||| | | || ||||||||||| Sbjct 45877 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGG 45818 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 | | || ||||| ||||| | | || || ||||| | |||||| |||||||| Sbjct 45817 TTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGG 45758 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 |||||||||||| ||||||||||| || ||||||||||| || ||||| |||||||| || Sbjct 45757 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGG 45698 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 |||| | |||||||||||||||||||||||||||| || | | |||||| |||| | Sbjct 45697 TCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGG 45638 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 ||| ||||| || || || |||||||| || | | || || | || ||||||||||| Sbjct 45637 TGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCATTCAA 45578 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 ||| ||||||||||||||||||||||| | | ||| || |||||||| | ||||| Sbjct 45577 CCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 45518 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 ||||| || |||||||||| | || ||||||||||||||||| ||||||||||| Sbjct 45517 TTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACGC 45458 Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCTGCTGAGTC 166763 ||||||||||| || || || ||||||| |||||| Sbjct 45457 TCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 634 bits (702), Expect = 7e-177 Identities = 747/1007 (74%), Gaps = 4/1007 (0%) Strand=Plus/Plus Query 167026 GATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 167085 ||||||||||| || | || ||||| ||||| ||||| ||||||||||||||||| || Sbjct 59805 GATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTCTATTC 59864 Query 167086 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 167145 || ||| | || ||| | || |||||||| ||||| | ||||||||| || |||| Sbjct 59865 CCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTTGG 59924 Query 167146 TATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTCTTACTGCGGCAG 167203 || ||||| || || || || | ||| || || || ||||| || ||||| || | Sbjct 59925 TACACTCACGGTCTAGCAAGTTC-GTTC-CTAGAAGGATGTAACTTCCTAACTGCTGCTG 59982 Query 167204 TTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCTC 167263 | |||||| || | ||||||||| || |||| ||| | ||||| |||||| | | Sbjct 59983 TATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCAC 60042 Query 167264 AAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 167323 |||| || || | ||| ||||| |||| || || ||||||||| | || || |||| Sbjct 60043 AAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACG 60102 Query 167324 GAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCCTGATTGGTA 167383 | | |||| | | ||||||||| ||| |||||||||| | ||||| | | |||| Sbjct 60103 GTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGTA 60162 Query 167384 TCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCC 167443 | ||||| ||||| || || |||||||||||||| || || || ||||||| ||||||| Sbjct 60163 TTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTCC 60222 Query 167444 TTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCA 167503 | | || || | |||||| || ||||||||||| || || || || || || | Sbjct 60223 TAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCAA 60282 Query 167504 TCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATA 167563 | ||||| ||||| || ||||| ||||| |||||||||||||| || || ||||| || | Sbjct 60283 TTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCACA 60342 Query 167564 TGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAG 167623 ||||||| ||||| |||||||| |||||||| || || | ||| || ||||||| || | Sbjct 60343 TGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACTG 60402 Query 167624 TAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTA 167683 ||||||| ||| | | ||||||||||| || |||||||| |||||| | | | Sbjct 60403 TAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCAA 60462 Query 167684 CTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCG 167743 | || |||||||||||| ||||||||||| |||||||| |||||||||||||| || | Sbjct 60463 CACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTTG 60522 Query 167744 GCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTATGG 167803 | |||| ||| ||||| || ||| | || ||||| ||| | ||||| || || | Sbjct 60523 GTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCTG 60582 Query 167804 GACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGATT 167863 | | |||||| |||| || || | ||| | || || || || ||||| ||||||| Sbjct 60583 GTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGATT 60642 Query 167864 TCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAAAA 167923 ||||||| |||||| | ||||| || || || || || || ||||| ||||| || |||| Sbjct 60643 TCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAAA 60702 Query 167924 ACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGAGA 167983 ||| |||||| ||||||||| | || || ||| | || | |||||||||||||| | Sbjct 60703 ACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAAA 60762 Query 167984 ACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 |||| | ||||| ||||| || || ||||| || ||||| || ||| Sbjct 60763 ACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTTAA 60809 >seq2756 Length=33385 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| |||| ||||||| || || ||||||||||||||| Sbjct 12688 TTCCTCAGTAGCTCAGGGGTAGAGCGATCGGCTGTTAACCGGTTTGTCGTAGGTTCAAAT 12629 Query 18188 CCTACCTGGGGAGTT 18202 ||||||||||||||| Sbjct 12628 CCTACCTGGGGAGTT 12614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561224062772800