Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3345 610 2e-170 >seq3345 Length=67807 Score = 610 bits (676), Expect = 2e-170 Identities = 736/997 (74%), Gaps = 8/997 (1%) Strand=Plus/Minus Query 41224 CTGGGAGCAGTTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTT 41283 ||||||||| || || | ||| |||| || ||| | ||| | || || | || ||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 41284 CGGAGTCCTTATGATTCCGTGC-CTCCTTGCCGCTA---CAACTTGTTTTATTATCGCCT 41339 ||| || ||| |||| | | || ||| | |||| || ||| ||||| || | Sbjct 46366 CGGTTGTCTAATG-TTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATT---GCTT 46311 Query 41340 TTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGT 41399 || | | ||||| || || || |||||||| ||||| || || || ||||| || || Sbjct 46310 TTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTAC 46251 Query 41400 TGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTAC 41459 | || || ||||||||||| || || || || ||||| || || || ||||| | | Sbjct 46250 TTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTC 46191 Query 41460 ACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCAT 41519 ||||||||||||| |||||||||||| || | ||||| ||||| |||||||| ||| | | Sbjct 46190 ACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTT 46131 Query 41520 TCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGG 41579 |||||| || ||||||||| ||||||| || | ||||||||| || || ||||||| Sbjct 46130 ACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGG 46071 Query 41580 AACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCG 41639 | ||| || || ||||| ||| | || ||||||| |||||| | ||| ||||| || | Sbjct 46070 AGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAG 46011 Query 41640 CCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTA 41699 | || || |||| || ||| | | || || | || || || ||||| || |||| || Sbjct 46010 CTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTA 45951 Query 41700 TGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATA 41759 |||| | || || || || || ||||||| |||||| || ||||| ||||||||||| | Sbjct 45950 TGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACA 45891 Query 41760 TTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCT 41819 | |||||||| || || |||||||| ||||| || || ||||| ||||| | | |||| Sbjct 45890 TCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCT 45831 Query 41820 CTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTT 41879 | |||||||||||| || || || || || || || ||||| || ||||| | | | Sbjct 45830 CAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAAT 45771 Query 41880 CACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTC 41939 | ||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||| Sbjct 45770 CTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTC 45711 Query 41940 ACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTC 41999 |||| || || ||||| || |||||||||| ||| || || || || ||| |||| Sbjct 45710 ACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTC 45651 Query 42000 ATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTA 42059 | ||| | || | ||| ||||| || || ||||| ||||| | | | || || ||| Sbjct 45650 ACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTA 45591 Query 42060 CCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGAC 42119 | ||||| |||||| | || ||||||||||| ||||| || | ||| | | | || | Sbjct 45590 CTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTC 45531 Query 42120 AGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGC 42179 || |||||||| ||||||||||||||||||||| | ||||| || | || || |||| Sbjct 45530 GTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGC 45471 Query 42180 ATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 | ||||| ||||| ||||||||||| || || || || Sbjct 45470 ACGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGC 45434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146208475758048