Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3345 612 5e-171 >seq3345 Length=67807 Score = 612 bits (678), Expect = 5e-171 Identities = 736/996 (74%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 42279 CTGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTT 42338 |||||| || || || ||| | ||||| ||| | ||| | || || |||| ||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 42339 TGGTGTGCTGATGATTCCCTG-TCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCA 42397 ||| || ||| |||||| ||| || | |||| | || || | ||||| | Sbjct 46366 CGGTTGTCTAATG-TTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTGCTTTTA 46308 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | || || ||||| ||||| || ||||| || ||||| || || |||| ||||| || | Sbjct 46307 TCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTT 46248 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || |||||||||||||||||||| || || || || ||||| || || | || | Sbjct 46247 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACT 46188 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | ||||||||||| | | | || || ||||| ||||| || || |||| | Sbjct 46187 TCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACC 46128 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 | || || || ||||||||| | || ||| | | ||||| | || || || ||||| | Sbjct 46127 AACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGC 46068 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 |||| ||||| || || ||| | || ||||||| |||||||| ||| || || || |||| Sbjct 46067 TTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTG 46008 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 |||| ||||||| ||| | |||| ||| | || ||||||||||| |||||||| |||| Sbjct 46007 CAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGC 45948 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || || ||||| |||||||||||| | || ||||| ||||| || ||||| | Sbjct 45947 CTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCC 45888 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || ||||| |||||||||||||| || ||||| ||||| || | ||||||| Sbjct 45887 TTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAG 45828 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||| ||| ||| || || || ||||| | |||||||| ||||| |||||| Sbjct 45827 CTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTG 45768 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 || || || ||||||||||||||||| || |||||||| ||||| |||||||| || | Sbjct 45767 CTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACG 45708 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057 ||||||| || || || |||||||||| || || || || || || | | |||| Sbjct 45707 GTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACT 45648 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 || | || | |||||||| || || || || ||||| || ||| | || || ||||| Sbjct 45647 TCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTA 45588 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAA--TCA 43175 |||| || ||| | || ||||| ||||| ||||| ||| |||| ||| ||| || || Sbjct 45587 TGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGAT--TCACAAGGTCG 45530 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| ||| ||||||||||| ||| | || ||| | ||||| || | || || ||||| Sbjct 45529 TGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCA 45470 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 |||||| || || || |||||||| || ||||| || Sbjct 45469 CGAGCGTAACGCTCACAACTTCCCTCTAGATCTAGC 45434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143526984409776