Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3345 711 0.0 >seq3345 Length=67807 Score = 711 bits (788), Expect = 0.0 Identities = 763/1006 (76%), Gaps = 2/1006 (0%) Strand=Plus/Plus Query 40521 GACTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCC 40580 |||||| ||| ||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct 45422 GACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCC 45481 Query 40581 ATACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG 40640 |||||||| | | |||||||| ||||||||||| || || ||| | | Sbjct 45482 ATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGTGTTGATTACACGACCTTGTGAA 45541 Query 40641 TCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCC 40700 ||||| ||||||||||| ||||| ||||| || ||||| || |||||||||| || |||| Sbjct 45542 TCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCCATAGTAGCTACACCC 45601 Query 40701 ATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGG 40760 || || || | ||| || |||| || || ||||||| || | |||||| || ||||| Sbjct 45602 ATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGACGAAGTGAAGTGCACGT 45661 Query 40761 CTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACG 40820 |||||||||||||| ||||| || | ||| | ||| ||||||||||| || || ||| Sbjct 45662 GAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTAACCGTGAGCTGCAACG 45721 Query 40821 ATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCC 40880 ||||| |||||||| |||| ||||| ||||| || |||||||| ||||| | || Sbjct 45722 ATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTAGCAGATTCGTTCTCA 45781 Query 40881 GTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 || || || || || | || ||||| || || ||||||||||| | || | || | Sbjct 45782 GTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCATAGCTGAGAATAGAGAA 45841 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 ||||| || || || ||||| || ||||| |||||||||||||| || |||||||| || Sbjct 45842 CCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCA 45901 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 |||||||| |||| |||||||||||| || ||| ||| |||| |||||||||||| ||| Sbjct 45902 GCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAGAGGCATACCATCTGAG 45961 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGA-GCTGCTGACAATGGAGC 41119 |||||||| ||||||| ||| || | || |||||| || ||| ||||| | | |||||| Sbjct 45962 AAAGAACCTTGACCGATTGGGTAGATTACGAATACTGC-AGATGCTGCAGCTACTGGAGC 46020 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCT 41179 || | | || ||| | |||||||| | ||||||||| | ||| ||||| ||||||| | Sbjct 46021 TGAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGAAAGCTCCCACTCACG 46080 Query 41180 ACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCC 41239 ||| ||| || ||| || || || ||||| || |||| ||||| || | || || Sbjct 46081 ACCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAGTTGGTAAGTACCACC 46140 Query 41240 GTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 ||||||||||||||| || | || | |||||||||||||||||||| || | ||||| Sbjct 46141 GTTGTATAGCCACTCATCGATTGAAGCAGCTTCCCAGATTGGGTAGAAGTGAACACCGAT 46200 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 ||||| || || ||||| ||||| ||||| || || ||||| ||||| | || || || Sbjct 46201 AGCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAAAGTAGAGAACC 46260 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 | ||| |||||||| || ||||| |||||||| || |||||||||||||| || || | Sbjct 46261 AGCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATAAAAGCAATAAC 46320 Query 41420 GAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTA 41479 | || || |||| || |||| | || | |||||| ||| |||||||| | ||| Sbjct 46321 GTAAGCTGAAATAGCTGTAAGTAGAGTAGGGAACATTAGACAACCGAACCAACCAATGTA 46380 Query 41480 TAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAACTTCTCCCAG 41525 ||| | ||| || || ||||| ||| || || | ||||||| Sbjct 46381 TAGTCTGTTCTCAGTTGAAGTGATCCATGCGCAGAATTGCTCCCAG 46426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143696577538008