Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq3345 847 0.0 >seq3345 Length=67807 Score = 847 bits (938), Expect = 0.0 Identities = 795/1005 (79%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 67335 AGTGCAACAGGCACAGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGC 67394 || ||||| || | ||||||| ||||||| || || |||||||||||||||||||||||| Sbjct 45407 AGAGCAACTGGTAGAGACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGC 45466 Query 67395 TCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATC 67454 ||||||||||||||||| || || || | |||||| ||||| |||||||| || Sbjct 45467 TCGTGCATAACTTCCATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGTGTTGATT 45526 Query 67455 ACTTTACCACCTGCGTCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCC 67514 || ||| || || || || || |||||||||||||||||||| |||||||||||| Sbjct 45527 ACACGACCTTGTGAATCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCC 45586 Query 67515 ATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAG 67574 ||||| | |||||||| | || |||||||| | || || || | ||| | |||| | Sbjct 45587 ATAGTAGCTACACCCATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGACG 45646 Query 67575 AAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTAT 67634 |||||||| | |||||||||||| || || || ||||||| | ||||| ||||| Sbjct 45647 AAGTGAAGTGCACGTGAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTAA 45706 Query 67635 CCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTC 67694 || ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 45707 CCGTGAGCTGCAACGATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTA 45766 Query 67695 TGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATA 67754 || || | |||||||||||| | ||| ||||| ||||| || ||||||||||||||| Sbjct 45767 GCAGATTCGTTCTCAGTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCATA 45826 Query 67755 GCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATA 67814 || || || ||||||||||||||||| || || |||||||| ||||||||||||||| Sbjct 45827 GCTGAGAATAGAGAACCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATA 45886 Query 67815 AGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGA 67874 |||||||||||||| |||||||| || | |||| |||| ||||||||||| ||||| ||| Sbjct 45887 AGGATGTTGTGCTCAGCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAGA 45946 Query 67875 GGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCT 67934 ||||| | || ||||||||||||||||||| || |||| | ||| || || ||||| Sbjct 45947 GGCATACCATCTGAGAAAGAACCTTGACCGATTGGGTAGATTACGAATACTGCAGATGCT 46006 Query 67935 GCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAA 67994 |||| |||||||| ||| | || ||||||||||| ||||||||||| |||||||||||| Sbjct 46007 GCAGCTACTGGAGCTGAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGAA 46066 Query 67995 AGTTCCCACTGACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGT 68054 || ||||||| |||||| ||| || | || || | ||||||||| || || ||| Sbjct 46067 AGCTCCCACTCACGACCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAGT 46126 Query 68055 TGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAG 68114 ||| ||| ||||| || || | ||||||||| | | || ||||||||||| || ||| Sbjct 46127 TGGTAAGTACCACCGTTGTATAGCCACTCATCGATTGAAGCAGCTTCCCAGATTGGGTAG 46186 Query 68115 AAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCG 68174 ||||||| |||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| Sbjct 46187 AAGTGAACACCGATAGCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCCG 46246 Query 68175 TACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCA 68234 || | || ||||| ||||| || || | ||||||||||||||| |||||||||||||| Sbjct 46247 TAAAGTAGAGAACCAGCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGCG 46306 Query 68235 ATGAATGCAATGATG-AAGC--AAGTTGCTGCTGCGAGCAAGCAAGGAATCATCA-ACAC 68290 || || ||||| | | |||| || | |||| || || | |||| ||| | ||| Sbjct 46307 ATAAAAGCAATAACGTAAGCTGAAATAGCTGTAAGTAG--AGTAGGGAA-CATTAGACA- 46362 Query 68291 ACCGAACCAACCAACATAGATGCGATTGTCAACTGAGGTGACCCA 68335 |||||||||||||| || | | || ||| ||| |||| ||| Sbjct 46363 ACCGAACCAACCAATGTATAGTCTGTTCTCAGTTGAAGTGATCCA 46407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566923019701920