Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq3345 820 0.0 seq2756 107 2e-18 >seq3345 Length=67807 Score = 820 bits (908), Expect = 0.0 Identities = 793/1012 (78%), Gaps = 14/1012 (1%) Strand=Plus/Plus Query 67831 GACTCAGCAGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCC 67890 |||||| ||||||| || || |||||||||||||| ||||||||||| |||||||||||| Sbjct 45422 GACTCACCAGCAGCTAGATCTAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCC 45481 Query 67891 ATACCCAAACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACT- 67949 ||||| | | ||||| |||| ||| ||||| || | || |||| || || Sbjct 45482 ATACCTAGGTTTGAACGGTTAAGAATGTCAGCCCAAGT--GTTGA---TTACACGACCTT 45536 Query 67950 ----ATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGT-GCTA 68004 ||| | | |||||||||||||||||||| || |||||||||||||| || ||| Sbjct 45537 GTGAATCTACAACTGACTGGTTGAAGTTGAAACCGTTTAGGTTGAATGCCATAGTAGCT- 45595 Query 68005 ACACCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGC 68064 ||||| | | || |||||||||||||| || ||||| ||| | |||| |||||| || Sbjct 45596 ACACCCATAGATGTTAACCAGATACCAACTACTGGCCAAGCACCTAGGACGAAGTGAAGT 45655 Query 68065 GAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCA 68124 | ||| ||||||||||| || || || ||||||| |||||||| ||||| || || || Sbjct 45656 GCACGTGAGTTGTTGAATGAAGCGTATTGGAAGAATAGACGACCTAAGTAACCGTGAGCT 45715 Query 68125 GCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCA 68184 ||||| |||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 45716 GCAACGATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCGTAGTTAGCAGATTCG 45775 Query 68185 GTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAAC 68244 | ||||| |||||||| | || || ||||| || || ||||| ||||| || ||| Sbjct 45776 TTCTCAGTAGTTTCACGGATTAGAGATGAAGTTACTAGAGAACCGTGCATAGCTGAGAAT 45835 Query 68245 AGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTG 68304 ||||| ||||| ||||| |||||||| || ||||| ||||| |||||||| ||||||||| Sbjct 45836 AGAGAACCACCGAATACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTG 45895 Query 68305 TGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCG 68364 ||||| |||||||| || |||||| |||||||||||||||| || || |||||||| | Sbjct 45896 TGCTCAGCTTGGAATACAAGCATGAAGTTGAAAGTACCAGAGATACCTAGAGGCATACCA 45955 Query 68365 TCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACA 68424 || ||||| ||||||||||||| || |||| | ||| ||||| |||||||| || || Sbjct 45956 TCTGAGAAAGAACCTTGACCGATTGGGTAGATTACGAATACTGCAGATGCTGCAGCTACT 46015 Query 68425 GGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCAT 68484 || || ||| | |||||||||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 46016 GGAGCTGAGAAAGCAACACAGATCCATGGACGCATACCTAGACGGTAAGAAAGCTCCCAC 46075 Query 68485 TCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGA 68544 ||||| || ||||| ||| | | |||||| | |||||| || | || |||||| ||| | Sbjct 46076 TCACGACCGATGTAAGCACATACACCAATGAAGAAGTGGAAAACAACTAGTTGGTAAGTA 46135 Query 68545 CCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGA 68604 ||||| ||||| | ||||||||| | | || |||||||| || || || ||||||| | Sbjct 46136 CCACCGTTGTATAGCCACTCATCGATTGAAGCAGCTTCCCAGATTGGGTAGAAGTGAACA 46195 Query 68605 CCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGT 68664 || || || |||||||| ||||| ||||||||||| ||||||||||| || || || || Sbjct 46196 CCGATAGCGTTTGAACTTGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAAAGTAGA 46255 Query 68665 GAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCG 68724 ||||||||||| || ||||| ||||||||||| || || || || || ||||| || || Sbjct 46256 GAACCAGCAACTGGCTCACGGATACCATCGATATCTACTGGAGGTGCTGCGATAAAAGCA 46315 Query 68725 ACGATG-AAACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACC 68783 | | | || | || | |||| ||| || ||||||| ||| || ||||||||||| Sbjct 46316 ATAACGTAAGCTGA-AATAGCTGTAAGTAGAGTAGGGAACATTAGACAACCGAACCAACC 46374 Query 68784 AACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAATGAATCCCAG 68835 || ||| || | |||||| || ||||| | |||| |||||||| |||||| Sbjct 46375 AATGTATAGTCTGTTCTCAGTTGAAGTGATCCATGCGCAGAATTGCTCCCAG 46426 Score = 646 bits (716), Expect = 1e-180 Identities = 759/1020 (74%), Gaps = 6/1020 (1%) Strand=Plus/Minus Query 66587 TTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTTG 66646 |||||| || || ||||| || || || || || ||||| | ||||||||||| ||||| Sbjct 60809 TTAAAGGGCGTTTCCACGTGGTAGTACCTCCTCAGGGAAGATGAAGTTTTCATGAGGTTG 60750 Query 66647 ATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAA 66706 ||| | |||| ||| ||||| | ||||||||| | || |||| || |||||||| Sbjct 60749 ATCTTGTGCAGCCATCCACGCACGGATACCTTCATTTAGAAGGTTGTTTTTCGTGTAGAA 60690 Query 66707 CGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACG 66766 || ||||| || ||||||||||| ||||| | |||||| || || || || || ||||| Sbjct 60689 TGTTTCGAATTCAGGGTCTTCTGCGGCTCTAAGCTCTTGCGAAACGAAATCGTATGCACG 60630 Query 66767 AAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAAC 66826 ||||| || || | ||| | ||||||||| | ||||||||| | ||| || || || Sbjct 60629 CAGGTTTAGTGCTAAACCTACAATACCGATCGCACTTGTCCACATACCAGCTACTGGTAC 60570 Query 66827 AAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGA 66886 || | ||| ||||| || ||||| | ||| || || |||| |||||| |||||||| Sbjct 60569 GAAAAGCATGAAGAAGTGTAACCAACGCTTGTTAGAGAATGCAACACCAAAAATCTGAGA 60510 Query 66887 CCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAG-AGTCGAATG 66945 |||||| |||||||||||||||||||||||||| ||||| ||| || | ||| ||||| Sbjct 60509 CCAGAAACGGTTTGCAGTAACCATTGAGTAAGTCTCTTCTGATTGTGTTGGAGT-GAATG 60451 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||||||||| || ||||||||||| | ||||| |||||||| || |||||| Sbjct 60450 CACGGAAAGTGTTCGCAGCATCACCATCTTCGAAAAGAGTGTTCTCTACAGTCGCACCAT 60391 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | || || |||||||| |||||||| ||||| |||||||| || || |||| Sbjct 60390 GAATAGCACATAGTAAGGCACCACCAAGGATACCAGCTACGCCCATCATGTGGAATGGGT 60331 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | | |||||||| ||||| ||||||||||| |||||||| || || ||||| | || | Sbjct 60330 TAAGAGTCCAGTTGTGGAAACCTTGTAGGAAAAGAAGGAAACGGAAAATTGCCGCTACAC 60271 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| ||| || || |||||||| | |||||| | |||||| | || || || ||| Sbjct 60270 CAAAACTTGGTGCAAAGAACCAACTTGCTTGACCTAAAGGGTAAACTAGGAAAACTGTAA 60211 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGAC 67245 | || || ||||| ||||||||||| || || || ||||| ||||| ||||| | | || Sbjct 60210 CGAATACGGCGATTGGACCAGAGAAAGCGATTGCGTTGTAAGGACGAATACCTACTAAAC 60151 Query 67246 GTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCA 67305 | || | |||||||| | ||| ||||||||||| | | || | ||||| || || | Sbjct 60150 GAGCGATCTCAAACTGTCTAAGACAGAAACCAATTACACCAAACGAACCGTGTAGTGCAA 60091 Query 67306 CAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGAC 67365 |||| ||| || || |||| ||||| ||| || || || || || | ||||| | Sbjct 60090 TAAAAGCCCAAAGACCACCAATTTGGAACCAACGAGTGATGTCACCTTGTGCTTCAGGTC 60031 Query 67366 CCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTGA 67425 |||| | || || || || ||||||||| | |||||| || || ||||| || || | Sbjct 60030 CCCAGATAAGTAGTAGTGAGTGACCCATACTGTTAGCAGGAGTAGATACAGCAGCAGTTA 59971 Query 67426 GAAAATTAGCACCCTCAAGATAACTAGAC--GCGAGTCCGTGAGTGTACCAGCTTGTGAC 67483 | || ||| || || || ||| | || || || |||||||||||||| ||| || Sbjct 59970 GGAAGTTACATCCTTCTAG-GAACGA-ACTTGCTAGACCGTGAGTGTACCAAGATGTTAC 59913 Query 67484 AAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAG 67543 || ||| ||||||| ||||| ||||| | || | | ||| || || ||||| || Sbjct 59912 GAAAGTAATACCAGTTAGCCAACCACCTACAGCTAGGAATGCACATGGGAATAGAAGAAG 59853 Query 67544 TCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGACATCGAA 67603 ||||||||| || || || || || || || || || ||||||||||||| | |||||| Sbjct 59852 TCCAGACCATCCAACGAAAACGAAACGGTCACGCTTTAGCCAGTCATCAATAAGATCGAA 59793 >seq2756 Length=33385 Score = 107 bits (118), Expect = 2e-18 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 35504 CATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCT 35563 |||| |||||||||||||||||||||||||||||| || || ||||||| |||| ||||| Sbjct 12609 CATAAAACTCCCCAGGTAGGATTTGAACCTACGACAAACCGGTTAACAGCCGATCGCTCT 12668 Query 35564 GCCGCTGAGCTACTGAGGA 35582 || ||||||||||||||| Sbjct 12669 ACCCCTGAGCTACTGAGGA 12687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572030001879840