Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq3345 861 0.0 >seq3345 Length=67807 Score = 861 bits (954), Expect = 0.0 Identities = 790/996 (79%), Gaps = 2/996 (0%) Strand=Plus/Minus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 ||||||| ||| | ||||| || | ||| | || || | ||||||||||| || Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTT-CATCGTCGCCTTCGTCGCTGCTCC 157698 ||| | || ||||| | |||| | || | || | | | || || |||| || || Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACC 46298 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || ||||| || |||||||| || || |||||||| || | || || ||||| Sbjct 46297 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAA 46238 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 ||||||||||||||| || || ||| ||| ||||| || ||| |||||||||| || || Sbjct 46237 CATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAAT 46178 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 ||||||||| || ||| | ||||||||||| || ||||||||| ||| |||||| || || Sbjct 46177 CTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGT 46118 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 || |||||| |||||||| | | ||| ||||| || ||||||||||| ||||| ||||| Sbjct 46117 TTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCG 46058 Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998 | |||||||||| || ||||||||||| || | || |||||||| |||||||||||||| Sbjct 46057 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 45998 Query 157999 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158058 |||||| | |||| || ||||||||||||||||||| |||| ||||||||| ||||| Sbjct 45997 AGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTAT 45938 Query 158059 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158118 |||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||| Sbjct 45937 CTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 45878 Query 158119 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 158178 ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 45877 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGG 45818 Query 158179 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGG 158238 ||| || ||||| || || | |||||||| ||||| | || || |||||||| Sbjct 45817 TTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGG 45758 Query 158239 TTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 158298 |||||||||||||||||| |||||||| || |||||||| ||||| || || ||||| || Sbjct 45757 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGG 45698 Query 158299 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158358 |||| | |||||||||||||||||||||||||||| ||| | | |||||| |||| | Sbjct 45697 TCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGG 45638 Query 158359 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 158418 ||| ||||| || || || |||||||| || | | || || | || ||||||||||| Sbjct 45637 TGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCATTCAA 45578 Query 158419 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 158478 ||| ||||||||||||||||||||||| | | ||| || |||||||| | ||||| Sbjct 45577 CCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 45518 Query 158479 CTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158538 ||||| || | || ||||| | || ||||||||||||||||| ||||||||||| Sbjct 45517 TTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACGC 45458 Query 158539 ACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTC 158574 ||||||||||| || || || ||||||| |||||| Sbjct 45457 TCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 572 bits (634), Expect = 2e-158 Identities = 732/1006 (73%), Gaps = 2/1006 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||||| || || || || || ||||| || || ||||||||||| || | | || Sbjct 59805 GATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTC-TATT 59863 Query 159366 CCCA-CTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 159424 |||| ||| | || || | || |||||||| ||||| | |||| || || ||| Sbjct 59864 CCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTTG 59923 Query 159425 GTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGT 159484 |||||| |||||||| || ||||| | || || || |||||| || || || ||||| Sbjct 59924 GTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTGCTGT 59983 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| || ||||||||| || || || || | ||||| ||||| | || Sbjct 59984 ATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCACA 60043 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 || | || || |||| |||| |||| || | ||| |||| | ||||| ||||| Sbjct 60044 AGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACGG 60103 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTAT 159664 | | || | ||||||||||| || | |||||||| | || ||| | | ||||| Sbjct 60104 TTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGTAT 60163 Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 ||||||||||| || || || ||||||||||| || || || || || | || ||||| Sbjct 60164 TCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTCCT 60223 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 | ||||| || ||||| | |||||||| || || || ||||| || || ||||| Sbjct 60224 AGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCAAT 60283 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 || | ||||| | ||||| ||||| || ||||||||||| | || || ||||| || Sbjct 60284 TTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCACAT 60343 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 |||||| || |||||||| || ||||| || |||| |||| || ||||| | ||||| Sbjct 60344 GATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACTGT 60403 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 ||||||||| || | |||||||| || || || || || || || | |||| Sbjct 60404 AGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCAAC 60463 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||| || ||||||||||| ||||| ||||||||||| |||||||| ||||| || || Sbjct 60464 ACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTTGG 60523 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 | |||| || ||||||||||| ||| | || ||||||||| | || || || || || Sbjct 60524 TGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCTGG 60583 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144 | | |||||| | || || ||| | || | || || || || ||||| |||||||| Sbjct 60584 TATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGATTT 60643 Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204 ||| |||||| | ||||| |||||||| || ||||| || || |||||||| ||||| Sbjct 60644 CGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAAAA 60703 Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264 || ||| | || ||||| | ||||| ||| |||| | |||||||| |||||||| Sbjct 60704 CAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAAAA 60763 Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAA 160310 ||| |||||||| || || ||| | || | || |||||||||||| Sbjct 60764 CTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548351011831840