Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1787 104 2e-17 seq1041 100 3e-16 seq2836 98.7 9e-16 seq1754 93.3 4e-14 seq2338 91.5 1e-13 >seq1787 Length=9008 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || || ||||| || || | | Sbjct 762 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCG 821 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | | | || || |||||||| ||||| || || || || ||||| || Sbjct 822 GACTCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 881 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||| ||||| | | | | || ||||| ||| Sbjct 882 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 941 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| ||||| || ||| | ||| Sbjct 942 ATCCAGAAGGAGTCGACCCTCCACCTCGTG 971 >seq1041 Length=17511 Score = 100 bits (110), Expect = 3e-16 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || || || | | Sbjct 5020 ATGCAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTGGAGGTCGAGCCGTCT 5079 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| ||||| || || || || ||||| || Sbjct 5080 GACTCGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 5139 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | | | | || || || ||| Sbjct 5140 CAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTCTCGGACTACAAC 5199 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAG 24940 || || ||||| ||||| || ||| | ||| | || | ||||| ||| ||||||| Sbjct 5200 ATCCAGAAGGAGTCGACCCTCCACCTTGTGCTCCGCCTCCGCGGTGGC--AACTGAG 5254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || ||||| || || | | Sbjct 4792 ATGCAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGCCGTCT 4851 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| ||||| || || || || ||||| || Sbjct 4852 GACTCGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 4911 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||| ||||| | | | | | || || || ||| Sbjct 4912 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTTTCGGACTACAAC 4971 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| | || | ||||| ||| Sbjct 4972 ATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGCCTCCGCGGTGGC 5019 >seq2836 Length=15749 Score = 98.7 bits (108), Expect = 9e-16 Identities = 173/249 (69%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGA 139419 |||| || || |||||||||||||| ||||||| |||| ||||||| ||||||| || Sbjct 8918 CACTCGTGCGGGCACATGAGCGACCAGTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGG 8977 Query 139420 TCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTA 139479 || || | ||| | |||| | | | |||||||| | || ||| || || | Sbjct 8978 TCAGGCACCCAGAGAGCGTAGAAGAGGTCGCGCGCGCGCGCCTCCTCC-TTGCCGTGATT 9036 Query 139480 CGT-TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 | | |||| || ||| || || | ||||| || |||||||| || || || | ||| | Sbjct 9037 CTTCTTCAGGTCAAGAAAGTCGCACACGTCCGCATGCCATGGCTCGAGGTACACGGCGAA 9096 Query 139539 TGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCG 139595 ||||| || || || ||| || || ||||||| || ||| || | | | ||||| Sbjct 9097 GGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCAGTGTTGTCGTACACGCG 9156 Query 139596 CAACATCGG 139604 || ||| || Sbjct 9157 CAGCATGGG 9165 >seq1754 Length=9193 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || || ||||| || || | | Sbjct 5993 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCT 6052 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || |||| || | ||| ||||| ||||| || || || || ||||| || Sbjct 6053 GACTCGATCGACAACGTCAAGGCCAAA-ATCCAGGACAAGGAGGGCATCCCGCCCGACCA 6111 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || ||||| | ||| | | | | || ||||| || Sbjct 6112 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAA 6171 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||| || |||| ||||| || ||| | | | | || | ||||| |||| Sbjct 6172 CATCCAGAAGGGGTCGACCCTCCACCTCGGGCTCCGCCTCCGCGGTGGCG 6221 >seq2338 Length=9794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| ||||| || || || || ||||| || || | | Sbjct 8339 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGACGGCG 8280 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | | | || || |||||||| ||||| || || || || ||||| || Sbjct 8279 GACTCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 8220 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| ||||| ||||| | | | | || ||||| || Sbjct 8219 CAGCGCCTGATCTTTGCCGGCCTCCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAT 8160 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| | || | || || ||| Sbjct 8159 ATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCCGCCTTCGTGGTGGC 8112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449878411867360