Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1041 147 1e-30 seq1754 136 3e-27 seq1787 132 3e-26 seq2338 114 8e-21 seq262 109 4e-19 seq3336 105 4e-18 seq1956 105 4e-18 seq2411 82.4 5e-11 >seq1041 Length=17511 Score = 147 bits (162), Expect = 1e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| |||||||| ||| ||||| | || Sbjct 5003 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCC 4944 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || |||||||| |||| | ||||||||||| Sbjct 4943 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 4884 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | ||||| ||| | |||||| || | ||| || ||| Sbjct 4883 TGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTC 4824 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || || ||||| ||||| || ||||||||||||| Sbjct 4823 TTGCCAGTGAGCGTCTTGACGAAGATCTGCATGA 4790 Score = 145 bits (160), Expect = 5e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| |||||||| ||| ||||| | || Sbjct 5231 AGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCC 5172 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || |||||||| |||| | ||||||||||| Sbjct 5171 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 5112 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | ||||| ||| | |||||| || | ||| || ||| Sbjct 5111 TGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTC 5052 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| ||||| || |||||||||||| Sbjct 5051 TTGCCAGTGAGCGTCTTGACGAAGATCTGCATG 5019 >seq1754 Length=9193 Score = 136 bits (150), Expect = 3e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||| | ||| | ||||||| ||||| || ||||| ||| |||| | || | || Sbjct 6198 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6139 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || ||||||||||| || |||||||| |||| | ||||||||||| | ||| Sbjct 6138 TGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6079 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || |||||| | ||||| ||| | |||||| || | ||| || ||||| || Sbjct 6078 TTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCG 6019 Query 34952 GTGAGGGTCTTTACAAAGATCTGCATGA 34979 ||||| ||||| |||||||||||||||| Sbjct 6018 GTGAGCGTCTTGACAAAGATCTGCATGA 5991 Score = 118 bits (130), Expect = 7e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34772 AGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGT 34831 ||||| | ||| | ||||||| ||||| || ||||| ||| |||| | || | || Sbjct 6426 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6367 Query 34832 TGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATT 34891 ||||| || ||||||||||| ||||||||||| |||| | ||||||||||| | ||| Sbjct 6366 TGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6307 Query 34892 TTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 || || ||| | ||||| || | |||||| || | ||| || ||||| || Sbjct 6306 TTGGCCTTTACGTTGTCGATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCG 6247 Query 34952 GTGAGGGTCTTTACAAAGATCTGCA 34976 |||| ||||| |||||||| |||| Sbjct 6246 CTGAGCGTCTTGACAAAGATTTGCA 6222 >seq1787 Length=9008 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| ||||| || ||||| ||| |||| | || Sbjct 973 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 914 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 913 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 854 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | ||||| || | |||||| || | ||| || ||| Sbjct 853 TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTC 794 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| ||||| ||||||||||||||| Sbjct 793 TTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 761 >seq2338 Length=9794 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| || || || ||||| ||| |||| | || Sbjct 8128 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCC 8187 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 8188 TCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 8247 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | ||||| || | |||||| || | ||| || ||| Sbjct 8248 TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTC 8307 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| ||||| ||||||||||||||| Sbjct 8308 TTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 8340 >seq262 Length=5824 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| | ||||||| || | |||||||| ||| |||| | || Sbjct 3046 AGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCCGAGAGGGTGCGGCCGTCC 3105 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||| | || |||||||| | || |||||||| |||| | ||||||||||| Sbjct 3106 TCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3165 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || | |||||| | ||||| ||| | |||||| || | ||| || ||| Sbjct 3166 TGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTC 3225 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| | ||| ||||||||||||||| Sbjct 3226 TTGCCGGTGAGCGCCTTGACAAAGATCTGCATG 3258 >seq3336 Length=58286 Score = 105 bits (116), Expect = 4e-18 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || |||||||| |||| || ||||||||| || || |||||||| ||| ||| | Sbjct 18363 CTGAGGACCAGATGAAGCGTCGCCTCCTTCTGTATTTTGTAGTCCGAGAGGGTGCAGCCG 18422 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || | ||| || ||| ||||||| | |||| ||| |||| | ||| ||| | Sbjct 18423 TCCTCGAGCTCCTTGCCCGCGTAGATCAGGCTCTGCTCGTCGGGCGGGATGCCCGCCTCG 18482 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTG---GCCTCGACATCAACGGTT 34939 || | || || |||||| | ||||| ||| | |||| |||||| | ||| Sbjct 18483 TCCTGGATCTTGGCCTTGACGTTGTCGATCGA--CATAGAAGGCCT-GACATCGAGGGTG 18539 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||| ||||| |||||||||||||| Sbjct 18540 ATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 18577 >seq1956 Length=13199 Score = 105 bits (116), Expect = 4e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || ||||| | ||| ||||||||||| || ||||| || ||| |||| | || || Sbjct 2535 ACGAGGTGCAGGGTCGAATCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCG 2594 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || ||||||||||| |||||||| |||| | ||||||||||| | Sbjct 2595 AGCTGCTTGCCCGCGAAGATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGA 2654 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || |||||| | ||||| || || || || |||| || | |||||| Sbjct 2655 ATCTTGGCCTTGACGTTGTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTT 2714 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCA 34976 || ||||| ||||| || | |||||||| Sbjct 2715 CCGGTGAGCGTCTTGACGATGATCTGCA 2742 >seq2411 Length=24813 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||| | || ||||||||| ||||| |||||||| ||| |||| | || Sbjct 4413 CAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTC 4354 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| || || ||||| || | || | ||||||||||| Sbjct 4353 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTC 4294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325679256472028