Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq3345 816 0.0 >seq3345 Length=67807 Score = 816 bits (904), Expect = 0.0 Identities = 810/1043 (78%), Gaps = 4/1043 (0%) Strand=Plus/Minus Query 177544 CTTCGTGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTT 177603 |||| ||||| |||||||| ||| | ||||| || | ||| | || || | |||| Sbjct 46429 CTTC-TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTT 46371 Query 177604 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTT-CATCGTCGCC 177662 ||||||| || ||| | || ||||| | |||| | | || |||| | | | || Sbjct 46370 GGTTCGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCT 46312 Query 177663 TTCGTCGCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 177722 || |||| || || || || || ||||| || |||||||| || || |||||||| || Sbjct 46311 TTTATCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTA 46252 Query 177723 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTT 177782 | || || |||||||||||||||||||| || || ||| ||| ||||| || ||| || Sbjct 46251 CTTTACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTT 46192 Query 177783 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 177842 |||||||| || ||||||||||| || ||| | ||||||||||| || ||||||||| || Sbjct 46191 CACTTCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACT 46132 Query 177843 TTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGG 177902 | |||||| || || || |||||| | || || | | ||| || || || ||||||||| Sbjct 46131 TACCAACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGG 46072 Query 177903 GAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTT 177962 || ||||| ||||||||||||||||| || |||||||||||||| | ||| || || || Sbjct 46071 GAGCTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTA 46012 Query 177963 GCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCT 178022 || |||||||| ||||| || || |||| || ||||||||||||| ||||| |||| | Sbjct 46011 GCTGCAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGT 45952 Query 178023 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAT 178082 |||||||| ||||||||||||||||| |||| |||||||||||||||||| || ||||| Sbjct 45951 ATGCCTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAAC 45892 Query 178083 ATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 178142 |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||| Sbjct 45891 ATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTC 45832 Query 178143 TCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAG 178202 || |||||||| || ||| || ||||| || || ||||||| || || || | || Sbjct 45831 TCAGCTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAA 45772 Query 178203 TCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCC 178262 || ||||| |||||||||||||| ||||||||||| || || |||||||| ||||| Sbjct 45771 TCTGCTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCT 45712 Query 178263 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTG 178322 || |||||||| |||||| | |||||||||| || || ||||||||||| ||| |||| Sbjct 45711 CACGGTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTT 45652 Query 178323 CACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCC 178382 |||||| |||| | || ||||| |||||||| |||||||| || | | |||||| | Sbjct 45651 CACTTCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCT 45592 Query 178383 ACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGA 178442 || |||||||| ||||| || || ||||||||||||||||| | | || |||||| Sbjct 45591 ACTATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGT 45532 Query 178443 CGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATG 178502 ||||| ||||||| ||||| ||| | || |||||| | || || |||||||| ||| Sbjct 45531 CGTGTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATG 45472 Query 178503 CACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGCAGCTGAGTCCACACCTGT 178562 ||||| | || || || |||||||| || ||||| || || | |||||| ||| || Sbjct 45471 CACGAGCGTAA-CGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGT 45413 Query 178563 GGCCTTGATTGCTCCATCTGTTG 178585 || | |||||||| |||||| Sbjct 45412 TGCTCTAGTTGCTCCAGCTGTTG 45390 Score = 576 bits (638), Expect = 2e-159 Identities = 740/1015 (73%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 178939 TTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 178998 |||||| | | ||||||||||| || || || || || || || || || ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 178999 CTCCTACTTCTTCCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTT 179057 || || | | |||||| ||| | || || | || |||||||| ||||| | |||| Sbjct 59853 CTTCTTC-TATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTT 59911 Query 179058 TGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCT 179117 || || ||||||||| || ||||| || ||||| | || ||||| |||||| || Sbjct 59912 CGTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCT 59971 Query 179118 TACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 179177 || || ||||| || || |||||| | ||||||||| || || || || | ||||| Sbjct 59972 AACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGG 60031 Query 179178 TCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGT 179237 ||||| | || || | || || |||| |||| |||| || || ||| ||| | Sbjct 60032 ACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTAT 60091 Query 179238 GGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 179297 || || |||||| | || | ||||||| ||| ||| | |||||||| | || || Sbjct 60092 TGCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCG 60151 Query 179298 TCTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGT 179357 | | | ||||| ||||||||||| || || ||||| ||||||| || ||||||||||| Sbjct 60152 TTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGT 60211 Query 179358 TAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGG 179417 || || || || | ||||| | || ||| | |||||||||||||| ||| ||||| Sbjct 60212 TACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGG 60271 Query 179418 TGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAA 179477 ||| ||||| || || | ||||| |||||| |||||||||||||||||||||| || || Sbjct 60272 TGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAA 60331 Query 179478 CCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCA 179537 ||| || ||||||||||| || || |||||||| |||||||| | || | ||||||||| Sbjct 60332 CCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCA 60391 Query 179538 TGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGC 179597 ||| | ||||||||||| || | | |||||||| || || ||||| || || Sbjct 60392 TGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGC 60451 Query 179598 GTTCGACT-CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGT 179656 ||| ||| | || ||| || ||||| || || |||||||| || |||||||| |||| Sbjct 60452 ATTC-ACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGT 60510 Query 179657 CGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTG 179716 | ||||| || || ||| | || || ||||||||||| |||||||| | ||| || | Sbjct 60511 CTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCG 60570 Query 179717 TTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTC 179776 | || || ||| | ||| | | || || || | || |||| || || || | Sbjct 60571 TACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGC 60630 Query 179777 GTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGT 179836 |||| || ||||| || |||||| | ||||| |||||||| ||||| ||||| || | Sbjct 60631 GTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACAT 60690 Query 179837 TCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATC 179896 |||| || || |||| ||||| |||||||| | ||||| ||| |||| | |||| Sbjct 60691 TCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATC 60750 Query 179897 AACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||| |||||||||||||||||||| || || || ||||| |||| ||||| || Sbjct 60751 AACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605641368293920