Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3345 143 2e-28 >seq3345 Length=67807 Score = 143 bits (158), Expect = 2e-28 Identities = 226/321 (70%), Gaps = 7/321 (2%) Strand=Plus/Plus Query 282152 TTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 || ||||| |||| ||| ||| ||||| ||||| | ||||||||| |||||||| Sbjct 25617 TTGCTCTTTAAATTCTTTAACTAACCATTGTACAATTTTTTCATCAAAATCGTCACCTCC 25676 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAG 282270 || | |||| ||||| || ||| ||||| |||| || ||| | | | || Sbjct 25677 TAAATGTGTATCACCTGATGTTGCTAATACTTCAAAAACACCGTCTCCCACTTCAAGAAC 25736 Query 282271 AGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 282330 | ||||||| || ||||| || | ||||||| || | | |||| || |||| Sbjct 25737 CGAAACATCAAAAGTACCACCCCCTAAGTCAAAAACTAGGA---TTGTTTCATTATCTT- 25792 Query 282331 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 ||||||| | |||||| | || || || || || || || |||||||| | | ||| Sbjct 25793 --TTTTATCTAAACCATAAGAAAGAGATGCGGCTGTGGGCTCGTTAATAATACGAAGAAC 25850 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 | | |||||| ||| | || || |||||||| ||||| ||||| | ||| |||||||| Sbjct 25851 TTCTAAACCAGCGATTTTACCAGCGTCTTTAGTAGCTTGCCTTTGAGCATCATTAAAATA 25910 Query 282451 TGCAGGAACAGTAATAACGGC 282471 ||||||||| ||||| || || Sbjct 25911 TGCAGGAACCGTAATTACTGC 25931 Score = 131 bits (144), Expect = 1e-24 Identities = 218/314 (69%), Gaps = 17/314 (5%) Strand=Plus/Plus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCAATGTTCTAAATACTCCA 86019 |||||||| || ||||| |||||||||| ||| | ||| ||| | ||| || || Sbjct 25660 TCAAAATCGTCACCTCCTAAATGTGTATCACCTGATGTTGCTAATACTTCAAAAACACCG 25719 Query 86020 TTTGAGATATTCATTAAC-GAAACATCTAATGTCCCAGCTCCTAAGTCATAAACAATTAC 86078 | | | |||| ||| |||||||| || || ||| | ||||||||| |||| | | Sbjct 25720 TCTCCCAC-TTCAAGAACCGAAACATCAAAAGTACCACCCCCTAAGTCAAAAACTAGGA- 25777 Query 86079 GTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTGC 86138 || ||| ||| ||||| | ||||||| || | ||||| ||| || Sbjct 25778 -----------TTGTTTCATTATCTTTTTTAT---CTAAACCATAAGAAAGAGATGCGGC 25823 Query 86139 AGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGT 86198 || || || ||||| || |||||| |||||||| || |||||| ||| || ||| Sbjct 25824 TGTGGGCTCGTTAATAATACGAAGAACTTCTAAACCAGCGATTTTACCAGCGTCTTTAGT 25883 Query 86199 TGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAGG 86258 ||||| || || || |||||||||||||| || || ||||| ||||||| |||| || Sbjct 25884 AGCTTGCCTTTGAGCATCATTAAAATATGCAGGAACCGTAATTACTGCTTGTTTAACAGT 25943 Query 86259 TTTTTGTAAATATT 86272 || | ||| |||| Sbjct 25944 TTCTCCTAAGTATT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740462885219112