Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3345 670 0.0 >seq3345 Length=67807 Score = 670 bits (742), Expect = 0.0 Identities = 738/977 (76%), Gaps = 4/977 (0%) Strand=Plus/Minus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||| ||||||| || | ||| | || || |||| ||||| || || ||| | || Sbjct 46407 TGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTAATGTTCCCT 46348 Query 28702 TGTCTCCTTGCAGCCACCATCTGCTT-CATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 ||| ||| |||| | || |||| | ||||||| || || || ||||| ||||| || Sbjct 46347 ACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACCTCCAGTAGA 46289 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 || ||||| ||||| || || || ||||| ||| || || |||||||||||||| || Sbjct 46288 TATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAACATCATCTC 46229 Query 28821 GGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 28880 || || || || || || || || ||||| | |||||||||||||| |||||||| Sbjct 46228 TGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAATCTGGGAAGC 46169 Query 28881 TAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTT 28940 | |||| | ||||| ||||| |||||||| || | | |||||| || || |||||||| Sbjct 46168 TGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGTTTTCCACTT 46109 Query 28941 CCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAAT 29000 | ||||||| || | ||||||||| || || |||||||| ||| || || ||||| || Sbjct 46108 CTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCGTCTAGGTAT 46049 Query 29001 GAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCT 29060 | | || ||||| ||||| || | ||||||||| || || || |||||||| || ||| | Sbjct 46048 GCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGCAGTATTCGT 45989 Query 29061 CGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCAC 29120 |||||||| |||||||||||||||| || | |||||| | ||||| || || || Sbjct 45988 AATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTATCTCTGGTAC 45929 Query 29121 CTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACAT 29180 ||||||| |||||| || |||||||| || || ||||| || |||||||| |||||||| Sbjct 45928 TTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACAT 45869 Query 29181 GCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGT 29240 ||| || |||||||| || |||||||| || ||||| || ||||||||||| || || Sbjct 45868 GCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGGTTCTCTAGT 45809 Query 29241 CACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTT 29300 || || || || | ||||| || ||||| || ||| ||||| ||||||||||| Sbjct 45808 AACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGGTTACAAGTT 45749 Query 29301 TGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGAT 29360 || ||||||||||||||||| |||||||| || |||||||||||||| || ||| | | Sbjct 45748 CGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGGTCGTCTATT 45689 Query 29361 CTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCC 29420 ||||||||| ||||| ||||| || ||| | || |||||| |||| | ||| ||||| Sbjct 45688 CTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGGTGCTTGGCC 45629 Query 29421 GGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGG 29480 || || || || ||||| | | |||| || |||| ||||| || || || ||||| Sbjct 45628 AGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCATTCAACCTAAACGG 45569 Query 29481 TTTTAACTTTAACCAGTCGCTTCTCGACA-ACAATGGTCGTGTCATTAATACTTGGGCTG 29539 ||| ||||| |||||||| || | || |||| |||||||| || || |||||||||| Sbjct 45568 TTTCAACTTCAACCAGTCAGTTGTAGATTCACAA-GGTCGTGTAATCAACACTTGGGCTG 45510 Query 29540 ATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACT 29599 | |||| || || | ||||| || | ||||| ||||| |||||||| ||||| |||| Sbjct 45509 ACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACT 45450 Query 29600 TCCCACTTGATCTGGCT 29616 |||| || ||||| ||| Sbjct 45449 TCCCTCTAGATCTAGCT 45433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146659657476552