Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1787 111 1e-19 seq1041 107 2e-18 seq1754 95.1 1e-14 seq2338 93.3 4e-14 seq2411 89.7 5e-13 >seq1787 Length=9008 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || |||| || |||||||| || ||||| Sbjct 953 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 894 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 893 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 835 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 |||| | || ||| || || ||||| | |||||||| || || || | || || | Sbjct 834 TGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 775 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 774 CAAAGATCTGCAT 762 >seq1041 Length=17511 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| ||| |||| || |||||||| ||||| || Sbjct 5211 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 5152 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 5151 GATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 5093 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || || ||||||| |||||||| || || || | || || | Sbjct 5092 TGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGA 5033 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 5032 CGAAGATCTGCAT 5020 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| ||| |||| || |||||||| ||||| || Sbjct 4983 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 4924 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 4923 GATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 4865 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || ||| || || ||||| | |||||||| || || || | || || | Sbjct 4864 TGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCAGTGAGCGTCTTGA 4805 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 4804 CGAAGATCTGCAT 4792 >seq1754 Length=9193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || ||||||||||| | | ||| || |||| | |||||||| ||||| || | Sbjct 6182 CCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGA 6123 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || |||||||||| ||| ||| || | |||| Sbjct 6122 TCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGAT-TTTGGCCTTGACGTTG 6064 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| || || ||||| | |||||||| || || || | || || ||| Sbjct 6063 TCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACA 6004 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 6003 AAGATCTGCAT 5993 >seq2338 Length=9794 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || |||||||| | | ||| || |||| || ||||| || ||||| Sbjct 8148 CTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAA 8207 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 8208 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8266 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 |||| | || ||| || || ||||| | |||||||| || || || | || || | Sbjct 8267 TGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 8326 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 8327 CAAAGATCTGCAT 8339 >seq2411 Length=24813 Score = 89.7 bits (98), Expect = 5e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| ||||||||||| |||||||| Sbjct 4392 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAA 4333 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| |||| || | || |||||||||| |||||| ||| | | | Sbjct 4332 GATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 4273 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAA 35716 | | | ||| | |||||||| | |||||||| || ||| |||| Sbjct 4272 GTCGATGGAGTCCGAAGGCTCCACCTCAAGGGTGATCGTCTTGCCCTGCAAA 4221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450774373652960