Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3275 143 3e-29 seq2059 136 4e-27 seq1041 122 9e-23 seq2411 100 3e-16 >seq3275 Length=32583 Score = 143 bits (158), Expect = 3e-29 Identities = 303/452 (67%), Gaps = 0/452 (0%) Strand=Plus/Plus Query 8542 TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCC 8601 || ||| |||||||| | ||| |||||||||||||||||||||| ||||||| || || Sbjct 7087 TCCAACCTGCGCCACCGGCCCATTGGCGTGGGCGTGCAAGGTCTCGCCGACGTCTTCGCG 7146 Query 8602 ATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAA 8661 | |||||||||||| ||| | ||| || ||| ||||||| || || Sbjct 7147 CAGCTGCGCCTCCCCTTCGAGTCCAAAGGCGCACGCGCGCTCAACCGGGCCATCTTCGAG 7206 Query 8662 ACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTAC 8721 ||| |||| |||| |||| | || | || | || || || | ||| | | Sbjct 7207 ACGCTGTACTACGCCGCACTCGAGGAGTCGTGCGAGCTCGCGCGCACGCTCGGCCCACAT 7266 Query 8722 GAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTC 8781 || |||||||||||||| ||| ||||| | | || |||||||||||| || Sbjct 7267 GAGAGCTACGCGGGCAGCCCCGCCTCGCGCGGCGTGCTCCAGTACGACATGTGGGGCGTG 7326 Query 8782 ACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTG 8841 |||||| | | ||| | ||| || | || ||| ||||| ||| || Sbjct 7327 ACGCCCTCGGCGCGCTGGGACTGGGCCGCCCTCAAGGCCAAGATTGCGACGCACGGGCTG 7386 Query 8842 CGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAAC 8901 ||||| |||||| || | || |||||||||||| |||| || || || |||| ||| Sbjct 7387 CGCAACTCGCTGCTGCTCGCGCCCATGCCCACCGCGTCGACGGCGCAGATCCTGGGCAAC 7446 Query 8902 AACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGAT 8961 ||||| | ||| ||||||| ||| |||| |||||| | | || | | || ||||| Sbjct 7447 AACGAGTGCTTCGAGCCGTACACGTCCAACCTGTACGCGCGGCGCACGCTCGCGGGCGAG 7506 Query 8962 TTTTTAATGCTGAATCGTCATTTGATGCGCGA 8993 || || |||| || | || || |||||| Sbjct 7507 TTCTTTGTGCTCAACCCGCACCTGCAGCGCGA 7538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 8253 CGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAA-A 8311 ||| || || | || |||||||| ||||| ||||| ||||||||| ||| || | Sbjct 6717 CGAGACGGGCACACCCTACATGCTCTACAAGGACGCAGCCAACGCCAAGTCCAACCAGCA 6776 Query 8312 GCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGC 8371 ||| | | ||||| || | ||| ||| |||||| | || || | |||||| ||||| Sbjct 6777 GCACC-TAGGCACGATCCGCTGCTCCAACCTGTGCACGGAGATCATTGAGTACACCGCGC 6835 Query 8372 CCGACGAAGTGGCCGTTTGCAATCTAGCGTCG 8403 ||||||| |||||||| ||||| || || ||| Sbjct 6836 CCGACGAGGTGGCCGTGTGCAACCTCGCCTCG 6867 >seq2059 Length=13280 Score = 136 bits (150), Expect = 4e-27 Identities = 893/1419 (63%), Gaps = 33/1419 (2%) Strand=Plus/Minus Query 7563 TCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTT 7622 ||| |||||| || ||||||||||| | ||||| ||| | ||||| || || || | Sbjct 6863 TCAGCACATGTTGATGCGCGTGGCGCTTGGCATCCACCTCAGCGACATCGAGGCGGCGAT 6804 Query 7623 GGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGC 7682 || ||||| | ||||| || ||| |||||||| ||||| |||||||| Sbjct 6803 TGAGACGTATACGCTCATGTCAGAGAGGTGGTTCACGCACGCCTCGCCGACCATGTTCAA 6744 Query 7683 CGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 ||||||||| | ||| || |||| ||||| || | || ||||| || ||| Sbjct 6743 CGCGGGCACGCCCAAGCCGCAGATGTCGTCGTGCTTCCTCCTCTCCATGGTGGACGACTC 6684 Query 7743 CATCGACGGCATTTACAACACGCTG-CGCGATTGCGCCAATATTTCCAAATACGGC-GGC 7800 |||||| ||||| ||| ||||||| ||| ||||| || | | || |||| || Sbjct 6683 CATCGAGGGCATCTACGCCACGCTGAAGCG-GTGCGCGCTCATCT-CGAAGGCGGCGGGT 6626 Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCA-TCGTGTCCACCAA 7859 || | || | | || | | | | || || || ||| || ||| | ||||| Sbjct 6625 GGCGTTGGAATCAGCGCGAGCAATATTCGTGCGTCGGGAAGCTACATTCGCG-GTACCAA 6567 Query 7860 CGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGT 7919 ||| | ||| || | || ||| ||||||| ||||| ||| ||| ||| || Sbjct 6566 CGGCACCTCCAATGGGCTCATCCCGATGCTGCGCGTCTTCAACAACACGGCGCGCTTCGT 6507 Query 7920 AGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGC 7976 ||| || || ||||| | ||| | ||| | || | ||||||||||||| Sbjct 6506 TTCGCAGGGCGGTGGCAAGCGGCAGGGCTCGTTCGCCGTGTACCTCGAGCCGTGGCACGG 6447 Query 7977 GGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCG 8036 ||||| | ||| | || |||| ||| || ||||| ||||| Sbjct 6446 AGACATCTTCGCCTTCCTCGATCTCAAAAAGAACCACGGCAAGGAAGAGGCGCGCGCGCG 6387 Query 8037 CGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGC 8096 || || |||| || | ||||||||||| || || |||| || || | | |||| Sbjct 6386 TGACCTCTTCTACGCGCTCTGGGTGCCCGACCTCTTCATGAAACGTGTCGAGGCCAACGC 6327 Query 8097 ACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAA 8156 | |||||||| | |||||| || ||||| | | || | || | | Sbjct 6326 CGAGTGGTCGCTGCTCTGCCCCAATGAATGCCCGGGGCTCTACGACAGCTGGGGCGCCGA 6267 Query 8157 ATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCA-AGTGAAAG 8215 || || ||||| | ||||| | || ||| | || | ||| || |||| Sbjct 6266 CTTCGAGGCGCTGTACGAGGGGTACGAGAAGGAGGGCAAG-GCGCGGCGCACCGTCAAAG 6208 Query 8216 CGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGC 8275 | | |||||| ||||||| |||| | || | ||| || || | ||||||||| | Sbjct 6207 CACAGGACCTGTGGTTCGCCATTCTCGACTCGCAGATCGAGACGGGCACGCCGTACATCC 6148 Query 8276 TGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCA 8335 ||||||| ||||| ||| ||| ||| || ||| ||||||| || | ||| Sbjct 6147 TGTACAAGGACGCCGCCAATCGCAAGTCCAACCAGCAGAACCTGGGCACGATCCGCTGCT 6088 Query 8336 GCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATC 8395 ||| |||||| | || || | |||||| | ||||||| || ||||| || ||||| | Sbjct 6087 CCAACCTGTGCACGGAGATCATCGAGTACACCTCGCCCGATGAGGTGGCAGTGTGCAACC 6028 Query 8396 TAGCGTCGGT-GTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAA 8454 | || ||| | | ||| |||| | |||| ||| | |||||| | | ||| || Sbjct 6027 TCGCCTCGCTCGCGTT--GCCGCGCTTCTTGAACGAGG---AAACACGT--GTCTTCGAC 5975 Query 8455 CAATTGAA--------AAACGCCGTGCA-AGTGACGGTACGCAATTTAGATCGCATCATT 8505 || ||| ||| | | || || ||| ||||| | | || |||| Sbjct 5974 CACGAGAAGTTGCGCGAAATCACATACATTGTCACG---CGCAACCTCAACCGTGTCATC 5918 Query 8506 GATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTT 8565 ||| ||| | || || || || |||||| || |||||||||||| | || ||| Sbjct 5917 GATAACAACTACTACCCGGTGCCCGAGGCGCGCAACTCTAACATGCGCCACCGGCCGGTT 5858 Query 8566 GGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGC 8625 ||| | |||||||| ||||| ||||||| |||| | || | || || | ||| || Sbjct 5857 GGCCTCGGCGTGCAGGGTCTCGCCGACGTGTTTATCCTGCTCAAGCTGCCGTTCGACTGC 5798 Query 8626 CAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAA 8685 | | || || |||||||| | || || || | || |||| || | Sbjct 5797 GAGGCTGCACGGGCGCTCAACACCGAGATTTTCGAGACCATCTACTACGCGGCCGTCTCG 5738 Query 8686 GCCAGCTGTCAACTTGCC-CGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGC 8744 || || | || ||| | | | ||| |||| || ||||||| ||| || | Sbjct 5737 GCGTCGTGCGACCTCGCCGCCATCGAT-GGCCCGTATGAGTCGTACGAAGGCTCACCCGT 5679 Query 8745 CAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTG 8804 ||| || | | || |||||||||||| || |||||| | | ||| | || Sbjct 5678 GAGCAAGGGCGTGCTCCAGTACGACATGTGGGGCGTGACGCCCTCGGCGCGCTGGGACTG 5619 Query 8805 GAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTA 8864 | || | || ||| ||||| ||| | ||||| |||||| | || || Sbjct 5618 GGCCGCCCTCAAGGCCAAGATTGCGGTGCACGGGCTACGCAACTCGCTGCTCGTCGCGCC 5559 Query 8865 CATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCAC 8924 |||||||||||| |||| || || || |||| |||||||| | ||| ||||| | ||| Sbjct 5558 CATGCCCACCGCGTCGACAGCGCAGATCCTGGGCAACAACGAGTGCTTCGAGCCATACAC 5499 Query 8925 CAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 |||| | ||| | | || |||||| ||||||| || Sbjct 5498 GTCCAACCTTTACTCGCGCCGCGTGTTGTCCGGCGAGTT 5460 >seq1041 Length=17511 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||||||| || || || ||||| || ||||||||||| | Sbjct 5018 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4959 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || |||| |||||||| |||||||| Sbjct 4958 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 4899 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | | ||| |||| || || Sbjct 4898 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACC 4839 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || | || || ||||| || ||||| Sbjct 4838 TCGAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || || | ||| || | ||| ||||| || || || ||||| || ||||||||||| Sbjct 5249 TTGCCACCGCGGAGGCGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 5190 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | ||| |||||||| ||||| || || |||| ||||||||| |||||| Sbjct 5189 GAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGC 5130 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || || ||||| ||| | | ||| |||| || Sbjct 5129 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCG 5070 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || || | || || ||||| || ||||| Sbjct 5069 ACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 >seq2411 Length=24813 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| |||||||| ||||| || ||||| || ||||||||||| | Sbjct 4427 CCACCGCGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4368 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| ||||| || | ||||||||||| || || Sbjct 4367 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGG 4308 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | | ||| || | ||||| Sbjct 4307 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCACC 4248 Query 134667 TCGAGAGTAATGGTTTTACC 134686 || || || || || || || Sbjct 4247 TCAAGGGTGATCGTCTTGCC 4228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505376844758240