Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq3345 865 0.0 >seq3345 Length=67807 Score = 865 bits (958), Expect = 0.0 Identities = 802/1012 (79%), Gaps = 4/1012 (0%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 ||||||| ||| | ||||| || | ||| | || || | ||||||||||| || Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTT-CATCGTCGCCTTCGTCGCTGCTCC 160078 ||| | || ||||| | |||| | || | || | | | || || |||| || || Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACC 46298 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 || || || ||||| || |||||||| || || |||||||| || | || || ||||| Sbjct 46297 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAA 46238 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 ||||||||||||||| || |||||| ||| ||||| || ||| |||||||||| || || Sbjct 46237 CATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAAT 46178 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 ||||||||| || ||| | ||||||||||| || ||||||||| ||| |||||| || || Sbjct 46177 CTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGT 46118 Query 160259 ATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 160318 || |||||| | || || | | ||| || || || ||||||||||| ||||| ||||| Sbjct 46117 TTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCG 46058 Query 160319 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 160378 | |||||||||| || ||||||||||| || | || |||||||| |||||||||||||| Sbjct 46057 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 45998 Query 160379 TGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160438 |||||| | | || || ||||||||||||||||||| |||| ||||||||| ||||| Sbjct 45997 AGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTAT 45938 Query 160439 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160498 |||||||||||| |||| |||||||||||||||||| || ||||| ||||||||||| || Sbjct 45937 CTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 45878 Query 160499 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 160558 ||||||||||| || |||||||| ||||||||||| ||| | ||||| ||||||||||| Sbjct 45877 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGG 45818 Query 160559 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACGG 160618 ||| || ||||| || || | |||||||| ||||| | || || |||||||| Sbjct 45817 TTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGG 45758 Query 160619 TTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGG 160678 ||| |||||||||||||| |||||||| ||||||||||| ||||| || |||||||| || Sbjct 45757 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGG 45698 Query 160679 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 160738 |||| | |||||||||| || |||||||||||||| ||| ||||||||||| |||| | Sbjct 45697 TCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGG 45638 Query 160739 AGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGC-ACCATGGCATTCA 160797 || ||||| ||||| || |||||||| || || | ||||| ||| || |||||||||| Sbjct 45637 TGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGT-AGCTACTATGGCATTCA 45579 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 |||| ||||||||||||||||||||||| | | ||| |||||||||||| | |||| Sbjct 45578 ACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 45519 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 160917 | ||||| ||| | || || ||| | || ||||||||||||||||| |||||||||| Sbjct 45518 CTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACG 45459 Query 160918 CACACAACTTCCCACTCGACCTCGCTGCTGCTGAGTCAACTCCTGTTGCTCT 160969 | ||||||||||| || || || ||||||| |||||| || |||||||| Sbjct 45458 CTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTGCTCT 45407 Score = 558 bits (618), Expect = 4e-154 Identities = 729/1006 (72%), Gaps = 2/1006 (0%) Strand=Plus/Plus Query 161700 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 161759 || |||||||| || || || ||||||||||| ||||| |||||||||||||||| | || Sbjct 59805 GATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTC-TATT 59863 Query 161760 CCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTG 161818 |||| ||| | || ||| | || |||||||| ||||| | ||||||| ||| || Sbjct 59864 CCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTTG 59923 Query 161819 GTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGT 161878 ||| || || ||||| || ||||| | || || || ||||| || || || | || Sbjct 59924 GTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTGCTGT 59983 Query 161879 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 161938 ||||| ||| || ||||||||| || || || ||| ||||||| ||||| || || Sbjct 59984 ATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCACA 60043 Query 161939 AGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGG 161998 ||| || || || ||| ||||| |||| || || ||| |||| | ||||| || || Sbjct 60044 AGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACGG 60103 Query 161999 TGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTAT 162058 | | || | ||||||| ||| || | |||||||| | || ||| | | ||||| Sbjct 60104 TTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGTAT 60163 Query 162059 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 162118 ||||| ||||| || || || ||||||||||| || || || || || | || ||||| Sbjct 60164 TCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTCCT 60223 Query 162119 TATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 162178 | ||||| || ||||| | |||||||| || || || ||||| || || ||||| Sbjct 60224 AGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCAAT 60283 Query 162179 CTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATAT 162238 || | ||||| | || || ||||| ||||| |||||||| || ||||| ||||| || Sbjct 60284 TTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCACAT 60343 Query 162239 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGT 162298 |||||| || |||||||| || ||||| || | |||| ||||||||| || | || || Sbjct 60344 GATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACTGT 60403 Query 162299 TGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGAC 162358 || || || | | ||| ||||| || || ||||| || || || | | || Sbjct 60404 AGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCAAC 60463 Query 162359 ACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 162418 ||| ||||||||||| || ||||| ||||||||||| |||||||| ||||| || || Sbjct 60464 ACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTTGG 60523 Query 162419 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 162478 | |||| || ||||||||||| ||| | || || |||||| | || || || || || Sbjct 60524 TGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCTGG 60583 Query 162479 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 162538 | | |||||| | || || ||| | ||| | || || ||||| ||||| |||||||| Sbjct 60584 TATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGATTT 60643 Query 162539 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAA 162598 ||| || ||| | ||||| |||||||| ||||| || ||||| |||||||| || || Sbjct 60644 CGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAAAA 60703 Query 162599 CATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAA 162658 || || || |||||||| | ||||| ||| | || | || ||||| ||||| || Sbjct 60704 CAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAAAA 60763 Query 162659 CTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 ||| |||||||| || || || || || | || |||||||||||| Sbjct 60764 CTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559480137154400