Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3345 854 0.0 >seq3345 Length=67807 Score = 854 bits (946), Expect = 0.0 Identities = 812/1038 (78%), Gaps = 0/1038 (0%) Strand=Plus/Minus Query 174457 TCTGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGT 174516 ||||||| || || || | ||| |||| ||||| | || | || ||| | ||||||| Sbjct 46427 TCTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGT 46368 Query 174517 TCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCG 174576 ||||| ||||||| | ||||| | | | || | | | || | |||| ||||| Sbjct 46367 TCGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTGCTTTTA 46308 Query 174577 TGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGT 174636 | | || || ||||| || ||||| || |||||||| ||||| |||||||| || | | Sbjct 46307 TCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTT 46248 Query 174637 ATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACT 174696 | ||||||||||||||||||||||| || ||||| ||||||||||| |||||| | |||| Sbjct 46247 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACT 46188 Query 174697 TCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCC 174756 ||||||||||||||||||| || || |||| || ||||| |||||||||||| ||| || Sbjct 46187 TCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACC 46128 Query 174757 AACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAAC 174816 |||||||||| ||||||||| | |||||| | | || || || || ||||||||||| | Sbjct 46127 AACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGC 46068 Query 174817 TCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAG 174876 | ||||| ||| |||||||| | || ||||||||||| || | ||| || ||||| || | Sbjct 46067 TTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTG 46008 Query 174877 CAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGC 174936 |||| || ||||||||| || |||| || ||||||||||||| |||||||| | |||| Sbjct 46007 CAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGC 45948 Query 174937 CCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCT 174996 | | ||||||||||| || ||||||| |||| | || |||||||| || || |||||| Sbjct 45947 CTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCC 45888 Query 174997 TGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAG 175056 | |||||||| ||||||||| | || || || ||||| ||||||||||| | ||||||| Sbjct 45887 TTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAG 45828 Query 175057 CGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCAC 175116 | ||||| ||||| || || || || || || ||||||| || ||||| | || || Sbjct 45827 CTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTG 45768 Query 175117 AGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATG 175176 ||||| |||||||||||||| |||||||||||||| || |||||||| ||||| || | Sbjct 45767 CTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACG 45708 Query 175177 GCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACT 175236 | ||||| |||||| | ||||||||||||||||||||||||||||||| |||| |||| Sbjct 45707 GTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACT 45648 Query 175237 TCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAA 175296 || || ||| || |||||||| || ||||||||||| || | | ||||| | || | Sbjct 45647 TCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTA 45588 Query 175297 TGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAG 175356 ||||||||||||| || |||||||||||||||||||| ||| | || ||||||| | | Sbjct 45587 TGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTG 45528 Query 175357 TATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATG 175416 || | ||||| ||||| || |||||||| | | || || |||||||| ||||| | Sbjct 45527 TAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACG 45468 Query 175417 AGAGAAATGCACACAACTTCCCACTAGATTTGGCAGCAGCTGAGTCCACACCAGTGGCTC 175476 || | || || ||||||||||| |||||| | || || | |||||| |||||| |||| Sbjct 45467 AGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTGCTC 45408 Query 175477 TAATTGCACCATCTGTTG 175494 || |||| ||| |||||| Sbjct 45407 TAGTTGCTCCAGCTGTTG 45390 Score = 477 bits (528), Expect = 1e-129 Identities = 689/968 (71%), Gaps = 8/968 (1%) Strand=Plus/Plus Query 175897 TTGGCTGGTCTGGATTACTACTTCTTCCCAC-TGCTTATCTTGCCATTGGCGGCTGGCTT 175955 |||| ||||||||| | || || |||||| ||| | || || | || || ||||| Sbjct 59839 TTGGATGGTCTGGACTTCTTCTA-TTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTA 59897 Query 175956 ACTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAG 176015 ||||| | ||||| || || ||||||||| || ||||| || ||| | || || Sbjct 59898 ACTGGTATTACTTTCGTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAA 59957 Query 176016 GGTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTT 176075 || |||||| || || || ||||| || ||||||||| | ||||||||| || || Sbjct 59958 GGATGTAACTTCCTAACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTA 60017 Query 176076 CTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGG 176135 || || | ||||| |||||| | || || ||| || || ||| ||||| |||| || Sbjct 60018 CTACTTATCTGGGGACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGT 60077 Query 176136 CTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAG 176195 |||||| | ||| |||| || |||||| | || | | | ||||| ||| ||| | ||| Sbjct 60078 CTTTGGGCTTTTATTGCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAG 60137 Query 176196 TTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCT 176255 ||||| | || | | | ||||| ||||| |||||||| || || ||| |||||| Sbjct 60138 TTTGAGATCGCTCGTTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCA 60197 Query 176256 ATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTT 176315 ||||| ||||| || | || || || | ||||| |||||||| | ||||||||| Sbjct 60198 ATCGCCGTATTCGTTACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTT 60257 Query 176316 GCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCAC 176375 || || |||||||| || ||||| || | ||||| | || || || ||||||||| Sbjct 60258 GCACCAAGTTTTGGTGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCAC 60317 Query 176376 AACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTA 176435 |||||||| || ||||| ||||| |||||||| || |||||||| || ||||| || || Sbjct 60318 AACTGGACTCTTAACCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTA 60377 Query 176436 CTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAAC 176495 |||| ||| || ||||| | ||||| || || || || | |||||||| || Sbjct 60378 CTATGTGCTATTCATGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCG 60437 Query 176496 AACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCG 176555 ||||| ||| ||| ||| | | || || |||||||| || || ||||||||||| Sbjct 60438 AACACTTTCCGTGCATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCA 60497 Query 176556 AACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTC 176615 ||||| |||||||| || || || || ||||| || ||| ||||||||| | |||||| Sbjct 60498 AACCGTTTCTGGTCTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTC 60557 Query 176616 TTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATCATTGGG 176672 || ||| | || || || || ||| | ||| ||||| || || || | || Sbjct 60558 TTCATGCTTTTCGTACCAGTAGCTGGTATGTGG---ACAAGTGCGATCGGTATTGTAGGT 60614 Query 176673 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGAT 176732 | || || || || ||||| || ||||| || |||||| ||||||| |||||||| Sbjct 60615 TTAGCACTAAACCTGCGTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGAC 60674 Query 176733 CCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGG 176792 ||||| || ||||| |||||||| || |||| |||||| || ||||| | | || ||| Sbjct 60675 CCTGAATTCGAAACATTCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGG 60734 Query 176793 ATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGA 176852 ||||| | |||||||| ||||| || | ||||| || || || ||||| | Sbjct 60735 ATGGCTGCACAAGATCAACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGT 60794 Query 176853 GGTAACGC 176860 || ||||| Sbjct 60795 GGAAACGC 60802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729898468502560