Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq3345 825 0.0 >seq3345 Length=67807 Score = 825 bits (914), Expect = 0.0 Identities = 782/996 (79%), Gaps = 2/996 (0%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||||| ||| | ||||| || | ||| | || || | ||||||||||| || Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGTTT-CATCGTCGCCTTCGTCGCTGCTCC 158497 ||| | || ||||| | |||| | || | || | | | || || |||| || || Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACC 46298 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || ||||| || |||||||| || || |||||||| || | || || ||||| Sbjct 46297 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAA 46238 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 ||||||||||||||| || || ||| ||| ||||| || ||| |||||||||| || || Sbjct 46237 CATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAAT 46178 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 ||||||||| || ||| | ||||||||||| || ||||||||| ||| |||||| || || Sbjct 46177 CTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGT 46118 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 || |||||| | || || | | ||| || || || ||||| ||||| ||||| ||||| Sbjct 46117 TTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACCG 46058 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 |||||||||| || ||||||||||| || | || || ||||| |||||||||||||| Sbjct 46057 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTGC 45998 Query 158798 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 158857 |||||| | |||| || ||||||||||||||||||| |||| ||||||||| ||||| Sbjct 45997 AGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTAT 45938 Query 158858 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 158917 |||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||| Sbjct 45937 CTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 45878 Query 158918 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| || Sbjct 45877 ATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACGG 45818 Query 158978 AAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTATGG 159037 ||| || ||||| || || | |||||||| ||||| | || || ||||| || Sbjct 45817 TTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACGG 45758 Query 159038 TTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGG 159097 |||||||||||| ||||||||||| || || || ||||| ||||| || |||||||| || Sbjct 45757 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAGG 45698 Query 159098 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 159157 |||| | |||||||||||||||||||||||||||| ||| | | |||||| |||| | Sbjct 45697 TCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAGG 45638 Query 159158 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAA 159217 ||| ||||| || || || |||||||| || | | || || | || ||||||||||| Sbjct 45637 TGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTATGGCATTCAA 45578 Query 159218 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 159277 ||| ||||||||||||||||||||||| | | ||| || |||||||| | ||||| Sbjct 45577 CCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 45518 Query 159278 CTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 159337 ||||| || | || |||||| || || ||||||||||||||||| ||||||||||| Sbjct 45517 TTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAACGC 45458 Query 159338 ACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTC 159373 ||||||||||| || || || ||||||| |||||| Sbjct 45457 TCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 574 bits (636), Expect = 5e-159 Identities = 735/1009 (73%), Gaps = 8/1009 (1%) Strand=Plus/Plus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 || |||||||| || || || ||||||||||| ||||| |||||||||||||||| | || Sbjct 59805 GATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTC-TATT 59863 Query 159971 CCCA-CTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTG 160029 |||| ||| | || ||| | || |||||||| ||||| | ||||||| ||| || Sbjct 59864 CCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTTG 59923 Query 160030 GTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGT 160089 ||| || || || || || ||||| | || || || ||||| || || || | || Sbjct 59924 GTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTGCTGT 59983 Query 160090 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 160149 ||||| ||| || ||||||||| || || || ||| ||||||| ||||| || || Sbjct 59984 ATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCACA 60043 Query 160150 AGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGG 160209 ||| || || | ||| ||||| |||| || || ||| |||| | ||||| || || Sbjct 60044 AGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACGG 60103 Query 160210 TGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTAT 160269 | | || | ||||||| ||| || | |||||||| | || ||| | | ||||| Sbjct 60104 TTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGTAT 60163 Query 160270 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCT 160329 ||||||||||| || || || ||||||||||| || || || || || | || ||||| Sbjct 60164 TCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTCCT 60223 Query 160330 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 160389 | ||||| || ||||| | |||||||| || || || ||||| || || ||||| Sbjct 60224 AGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCAAT 60283 Query 160390 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATAT 160449 || | ||||| | ||||| ||||| || ||||||||||| |||||||| ||||| || Sbjct 60284 TTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCACAT 60343 Query 160450 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGT 160509 |||||| || |||||||| || || || || | || |||| || ||||| | ||||| Sbjct 60344 GATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACTGT 60403 Query 160510 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGAC 160569 ||||||||| || | |||||||| || || || || || || || | | || Sbjct 60404 AGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCAAC 60463 Query 160570 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160629 ||| |||||||||||| || ||||| ||||||||||| |||||||| ||||| || || Sbjct 60464 ACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTTGG 60523 Query 160630 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 160689 | |||| || ||||||||||| ||| | || || |||||| | || || || || || Sbjct 60524 TGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCTGG 60583 Query 160690 TCTTTGGACATCCAGT---ATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGA 160746 | | |||||| ||| || || ||| | ||| | || || || || ||||| ||||| Sbjct 60584 TATGTGGACA---AGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGA 60640 Query 160747 TTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAA 160806 |||||| |||||| ||||||| |||||||| || ||||| || || |||||||| || Sbjct 60641 TTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAA 60700 Query 160807 GAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGA 160866 |||| ||| || |||||||| | ||||| ||| | || | || ||||| ||||| Sbjct 60701 AAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGA 60760 Query 160867 GAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 160915 ||||| |||||||| || || || || || | || |||||||||||| Sbjct 60761 AAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552450037000960