Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq3345 895 0.0 >seq3345 Length=67807 Score = 895 bits (992), Expect = 0.0 Identities = 821/1035 (79%), Gaps = 2/1035 (0%) Strand=Plus/Minus Query 178852 TGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTC 178911 ||||| || ||||||| ||| | || || || | || | | || ||||||||||| Sbjct 46425 TGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTC 46366 Query 178912 GGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATCTGTTT-CATCGTTGCTTTCGT 178970 ||| || ||| | ||||| | ||| | || | | || | || | | ||||||| | Sbjct 46365 GGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTAT 46307 Query 178971 AGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179030 ||||||||||| || ||||| || || |||||||| || || |||||||| || | || Sbjct 46306 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTA 46247 Query 179031 TGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTT 179090 |||||||||||||||||||||||||| || |||||||||||||| || ||| | ||||| Sbjct 46246 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTT 46187 Query 179091 CTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 179150 |||||| ||||||||||| || ||| ||||||||||||| || ||||||||| ||| ||| Sbjct 46186 CTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCA 46127 Query 179151 ACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 179210 ||| || || ||||||||| | || || | | ||| || || || ||||||||||| || Sbjct 46126 ACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCT 46067 Query 179211 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGC 179270 ||||||||||||||||||||||||||||||||||||||| | ||| || ||||| ||||| Sbjct 46066 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGC 46007 Query 179271 TGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCC 179330 || |||||||||| | |||| || ||||||||||||||||||| |||| |||||| Sbjct 46006 AGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCC 45947 Query 179331 TCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCT 179390 ||| ||||||||||||||||| |||| |||||||||||||||||| || ||||||||||| Sbjct 45946 TCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCT 45887 Query 179391 TATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGC 179450 ||||||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| || Sbjct 45886 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGC 45827 Query 179451 TATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACA 179510 ||||||||| ||| || ||||| || || | |||||||| ||||||| || || Sbjct 45826 TATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGC 45767 Query 179511 GAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGG 179570 ||||| ||||| |||||||| |||||||||||||| || |||||||| ||||| || || Sbjct 45766 TAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGG 45707 Query 179571 CTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTT 179630 ||||| |||||| | |||||||||| || || || ||||||||||| | | ||||| Sbjct 45706 TTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTT 45647 Query 179631 CTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCAT 179690 | |||| | ||| ||||| || || || |||||||| || || | || || | || || Sbjct 45646 CGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTAT 45587 Query 179691 GGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGT 179750 ||| |||||||| ||||||||||||||||||||||| | | || ||||| ||||| Sbjct 45586 GGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGT 45527 Query 179751 CCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGA 179810 | ||||| ||||| ||| | | |||||| || | ||||||||||||||||| || Sbjct 45526 AATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGA 45467 Query 179811 GCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACACCTGTAGCACT 179870 ||||||||| ||||||||||| || || || ||||||| ||||||| ||| || || || Sbjct 45466 GCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTCTCTACCAGTTGCTCT 45407 Query 179871 TGTAGCACCTTCTGT 179885 || || || |||| Sbjct 45406 AGTTGCTCCAGCTGT 45392 Score = 603 bits (668), Expect = 1e-167 Identities = 744/1012 (74%), Gaps = 4/1012 (0%) Strand=Plus/Plus Query 180021 TTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGA 180080 |||||| | | || |||||||| || || ||||| || || || || || ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 180081 CTACTACTTCTTCCCA-CTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTT 180139 || || | | |||||| ||| | || || | || |||||||| ||||| | |||| Sbjct 59853 CTTCTTC-TATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTT 59911 Query 180140 TGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCT 180199 || || ||||||||| |||||||| || ||| | || ||||| |||||| || Sbjct 59912 CGTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCT 59971 Query 180200 TACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 180259 || || ||||| || || |||||| || ||||||||| || || || || | ||||| Sbjct 59972 AACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGG 60031 Query 180260 TCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGT 180319 ||||| | || || | || || |||| |||| |||| || || ||| ||| | Sbjct 60032 ACCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTAT 60091 Query 180320 GGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATG-CTACGCCAGTTTGAACTGGCAC 180378 || || |||||| | || | ||||||| ||| || || | |||||||| | || | Sbjct 60092 TGCACTACACGGTTCGTTTGGTGTAATTGG-TTTCTGTCTTAGACAGTTTGAGATCGCTC 60150 Query 180379 GTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTG 180438 || | | ||||| ||||||||||| || || || ||||||||||| ||||| ||||| | Sbjct 60151 GTTTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCG 60210 Query 180439 TCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTG 180498 | | || || || | ||||| | ||||| | |||||||||||||| || ||||| Sbjct 60211 TTACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTG 60270 Query 180499 GGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCA 180558 | ||||| ||||| || | ||||| || || || || ||||||||||||||||| || | Sbjct 60271 GTGTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTA 60330 Query 180559 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCC 180618 |||| ||||| |||||||| || |||||||| || ||||| || || |||| || || | Sbjct 60331 ACCCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTC 60390 Query 180619 ATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 180678 |||| | ||||| |||||||| || | |||||||| || || ||||| || | Sbjct 60391 ATGGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTG 60450 Query 180679 CATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGT 180738 |||| | |||| ||| || || |||||||| ||||| ||||||||||| ||||||| Sbjct 60451 CATTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGT 60510 Query 180739 CGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 180798 | ||||| || ||| ||||||| ||||||||||| ||| | || || |||||| | || | Sbjct 60511 CTCAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCG 60570 Query 180799 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 180858 | || || ||| | |||||| | || || ||| | ||| | || || ||||| | Sbjct 60571 TACCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGC 60630 Query 180859 GTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGT 180918 |||| ||||||||||| |||||| | ||||| |||||||| ||||| ||||| || | Sbjct 60631 GTGCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACAT 60690 Query 180919 TCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATC 180978 ||||||| || |||| ||| | |||||||| | ||||| ||| |||| | |||| Sbjct 60691 TCTACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATC 60750 Query 180979 AACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||| || |||||||||||||||||||| || || |||||| | || ||||| Sbjct 60751 AACCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGC 60802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610303569442560