Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3275 114 2e-20 seq2445 100 4e-16 seq1382 96.9 4e-15 >seq3275 Length=32583 Score = 114 bits (126), Expect = 2e-20 Identities = 352/539 (65%), Gaps = 9/539 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || ||| ||| || | |||||||| | Sbjct 6878 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCCACCTCGTCGGGCGCGGTGTACTCAATG 6819 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| | ||||| || | | || ||||| ||| | Sbjct 6818 ATCTCCGTGCACAGGTTGGAGCAGCGGATCGTGCCTAGGTGCTGCTGGTTGGACTTGGCG 6759 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| || |||||||||||||||||||| || |||||||| |||| | | |||||| Sbjct 6758 TTGGCTGCGTCCTTGTAGAGCATGTAGGGTGTGCCCGTCTCGATCTGCGCCTCGAGAAT- 6700 Query 111410 GCCTTCCAA-ACATCGGCGGCTGGTACAATG-GCGTTGGCCCGTCCCTCCGC-CTCGTAC 111466 ||| | ||| | || || | || | ||| | || | || ||| |||||| Sbjct 6699 --CTTGAACCACAGCTGCTGCGCGGGCACGGTGCGCCGCGCCTTGCCCTCGCGCTCGTAG 6642 Query 111467 TTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT 111526 ||| || || || || | |||| | |||| ||| || || || ||| Sbjct 6641 CGCTCGTACAGCGCCTCGAAGGCGGCACCGTGGGTGTCGACGAGGCCGGGGCACTCGTCA 6582 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 || ||||| || ||||| | || |||| || ||||||||||| ||||| || | | Sbjct 6581 GGGCAGAAGAGCGACCACTCGCCGTTGGCCTCGACGCGCTTCATGAAGAGGTCGGGCACC 6522 Query 111587 CACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 111646 || || | | ||||| || | || |||||||| | || ||||| || | | Sbjct 6521 CAGAGCGCGTAGAAGAGGTCGCGCGCGCGCGCCTCTTCCTTGCCGTGGTTCTTGCGCAGC 6462 Query 111647 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 111706 || ||||| || | || ||||| ||||||||||| || || || |||| | ||||| Sbjct 6461 TCGAGGAAGTCGAAGACGTCCGCATGCCATGGCTCGAGGTACACAGCGAAGGCGCCCTTG 6402 Query 111707 CG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 || | || | || | || |||||||| ||||||| || ||||| ||||| || Sbjct 6401 CGCTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGTGGCGTCGAAGACGCGGAGCATGGG 6343 >seq2445 Length=34287 Score = 100 bits (110), Expect = 4e-16 Identities = 261/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 9156 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 9215 ||| |||| || || || |||| ||| ||| || ||| ||||| || ||||| Sbjct 33016 CGCTTCTACCAGGCGTCCACCTCGGAGCTGTACGGGCTCGTTCAGGAGGTGCCGCAAAAG 33075 Query 9216 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 9275 ||| ||| ||||||||||| |||||| |||| ||| | ||| || | ||| Sbjct 33076 GAGACGACGCCCTTCTACCCGCGCTCGCCGTACGCCGTCGCCAAGCAGTACGCCTACTGG 33135 Query 9276 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 9335 |||| || || |||||| | ||||| || ||| | | || ||||||||||| Sbjct 33136 ATCGTGGTCAACTATCGCGAGGCATACGGCATGCATGCATCCAATGGCATCCTCTTCAAT 33195 Query 9336 CATGAATCACCGAGACGAGGTGCAGAC-TTTGTGACCATGAAGATTAC-CGAG-GGTATC 9392 || || || ||| | || || || || ||||||||| ||| | || || | |||| | Sbjct 33196 CACGAGTCCCCGCGCCGCGG-GCCCACGTTTGTGACCCGCAAGGTGACGCGCGCGGTAGC 33254 Query 9393 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 9452 | |||| | ||| | |||| | | | | |||| ||||| ||||| || | Sbjct 33255 --GCGCATCAAGCTGGGCAAGCAGGACTGCCTGTACATGGGCAACATCGACGCGAAGCGC 33312 Query 9453 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 9512 || ||||| |||||| ||||| || ||| |||||| | ||| | || || || Sbjct 33313 GACTGGGGACACGCGCGCGACTACGTCGAAATGATGTGGATGATGATGCAGCAGCCAGAG 33372 Query 9513 GCCGACGAATATGTAGTAGCAACGGGTGAGAC 9544 || ||||| ||||| || || || || ||||| Sbjct 33373 GCGGACGACTATGTCGTCGCCACCGGCGAGAC 33404 >seq1382 Length=19088 Score = 96.9 bits (106), Expect = 4e-15 Identities = 272/414 (66%), Gaps = 9/414 (2%) Strand=Plus/Plus Query 11449 GCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGC 11508 ||| || || || || ||||| ||||| || | || || | ||| |||| || ||||| Sbjct 8612 GCGGTCGAAGCGGCCGGGGCGGAGGAGCGCCGCGTCGAGCACATCGGCGCGGTTGGTGGC 8671 Query 11509 CGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATT 11568 || | || | | ||| | | | || ||||| ||||||||||| || | || || Sbjct 8672 GGCGAGCACGATGACGCCCGAGTTACCCTCGAAGCCGTCCATCTCGGTCAGGATCTGGTT 8731 Query 11569 AATTGTTTGTTCTCTCTCATCATTT--GCTGGC-ATACCACC-----AGCACTG-CGTTG 11619 | || || || | ||| || || || | | || || | ||| | || || Sbjct 8732 GAGCGTCTGCTCGCGCTCGTCGTTGCCGCCGCCCATGCCGCTGCCCGAGCCCGCACGCTG 8791 Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 | |||||| ||||| ||||| ||||||||||| || || || ||| | || Sbjct 8792 CCGGCCCACAGCATCGATCTCGTCAATGAAGACGATGCACGGCGCATTCTTCTTAGCCTC 8851 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | ||||||||||| || | | || ||||| || || |||||||| || || | | Sbjct 8852 CCCGAAGAGATCGCGCACGCGGCTCGCGCCCACGCCGACGAACATCTCGACGAACTCGGA 8911 Query 11740 GGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11799 | | ||| | |||||| ||||| | || ||||||| || || ||||| || || Sbjct 8912 GCCCGAGGCCGAGATGAAGGGGACGCCCGCCTCGCCCGCGACCGCGCGCGCGAGCAGCGT 8971 Query 11800 CTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 ||| ||||| || || ||| | | | ||||| || ||||||||||| || Sbjct 8972 CTTGCCCGTGCCCGGAGGCCCCTCCATGATCGCGCCGCGCGGGATCTTGGCGCC 9025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628005214435200