Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3345 145 2e-29 seq1956 102 2e-16 >seq3345 Length=67807 Score = 145 bits (160), Expect = 2e-29 Identities = 217/307 (71%), Gaps = 12/307 (4%) Strand=Plus/Minus Query 349585 ATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGC 349644 ||| ||||| ||||| || | | || || ||||| || || || |||||||||||||| Sbjct 25956 ATACTTAGGAGAAACTGTTAAACAAGCAGTAATTACGGTTCCTGCATATTTTAATGATGC 25897 Query 349645 CCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGAT 349704 || | || || ||||| ||||| | || || || ||| | ||||| | || || Sbjct 25896 TCAAAGGCAAGCTACTAAAGACGCTGGTAAAATCGCTGGTTTAGAAGTTCTTCGTATTAT 25837 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 ||| || ||||| || ||| | || | ||||| | ||||||| |||| || Sbjct 25836 TAACGAGCCCACAGCCGCATCTCTTTCTTATGGTTTAGATAAAA---------AAGATAA 25786 Query 349765 --aaaTATTCTTA-TTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACT 349821 ||| | || || ||||||| ||||| ||||||||||||||||| || | || | | Sbjct 25785 TGAAACAATCCTAGTTTTTGACTTAGGGGGTGGTACTTTTGATGTTTCGGTTCTTGAAGT 25726 Query 349822 TGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 | ||| || |||||||||| |||||| | |||||||||||| | || || || || Sbjct 25725 GGGAGACGGTGTTTTTGAAGTATTAGCAACATCAGGTGATACACATTTAGGAGGTGACGA 25666 Query 349882 TTTTGAT 349888 ||||||| Sbjct 25665 TTTTGAT 25659 >seq1956 Length=13199 Score = 102 bits (112), Expect = 2e-16 Identities = 156/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 140517 CGTAATCTTA-GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGT 140575 ||||| ||| |||| || || || || || || || |||||||| || || || | || Sbjct 2522 CGTAAGCTTCTGAACGAGGTGCAGGGTCGAATCCTTCTGAATATTGTAGTCTGAGAGGGT 2581 Query 140576 TCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCC 140635 || || || || || || || || || ||||| || ||||| || || || || || Sbjct 2582 GCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGATCTGCTGGTCGGGCGGGATGCC 2641 Query 140636 TTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAG 140695 || || |||||||| || || || || || || ||||| || || | || || ||||| Sbjct 2642 CTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGAGTCCGACGCGTCCACCTCAAG 2701 Query 140696 TGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || | ||||||||||| || || || || | ||||||| Sbjct 2702 CGTGAGCGTCTTTCCGGTGAGCGTCTTGACGATGATCTGCA 2742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515188158759836