Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1041 89.7 3e-13 seq2338 87.8 1e-12 >seq1041 Length=17511 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | || || | ||| | ||||| || |||||| || ||||| || || Sbjct 5250 GTTGCCACCGCGGAGGCGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 5191 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || ||| |||| || || || || || || || || | |||||| ||||| || Sbjct 5190 CGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGG 5131 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCT 34654 ||| | ||||||||||| |||| || | || ||| | ||| | ||| || Sbjct 5130 CGGGATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGTCAATCGAGTCAGACGGCT 5072 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || |||| ||| ||||| || || || | ||| || || || ||||||||| Sbjct 5071 CGACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCATG 5019 >seq2338 Length=9794 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | ||| | ||||| || |||||| || || || ||||| || Sbjct 8112 GCCACCACGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGA 8171 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || |||||||| || | ||||| ||||| || || Sbjct 8172 GAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 8231 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || | ||| | |||| | Sbjct 8232 GATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGA 8290 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| ||||| || ||||| | ||| || ||||| ||||||||| Sbjct 8291 CCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 8340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314716512362996