Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1041 122 8e-23 seq1787 120 3e-22 seq1754 120 3e-22 seq2338 102 7e-17 seq2411 100 2e-16 >seq1041 Length=17511 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || || || ||||| Sbjct 5019 CATGCAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTGGAGGTCGAGCCGTC 5078 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||||||||| | ||||| || || || ||||| || ||||| || ||||| || Sbjct 5079 TGACTCGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 5138 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | || ||| | ||| | || || ||||| Sbjct 5139 GCAGCGTCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTCTCGGACTACAA 5198 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||| || |||||||||||| | || | || | || | || ||||||| Sbjct 5199 CATCCAGAAGGAGTCGACCCTCCACCTTGTGCTCCGCCTCCGCGGTGGCA 5248 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || || || ||||| Sbjct 4791 CATGCAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGCCGTC 4850 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 4851 TGACTCGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 4910 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || ||| | ||| |||| || ||||| Sbjct 4911 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTTTCGGACTACAA 4970 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || | || | || | || |||||||| Sbjct 4971 CATCCAGAAGGAGTCGACCCTGCACCTCGTGCTCCGCCTCCGCGGTGGCAT 5021 >seq1787 Length=9008 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || || || || || ||||| Sbjct 761 CATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTC 820 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| | | ||||| || || || ||||| || ||||| || ||||| || Sbjct 821 GGACTCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 880 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||||| || | || ||| | ||| | || |||||||| Sbjct 881 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 940 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||||||||||| Sbjct 941 CATCCAGAAGGAGTCGACC 959 >seq1754 Length=9193 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || || || || || ||||| Sbjct 5992 CATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTC 6051 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | ||||| ||||| || ||||| || ||||| || ||||| || Sbjct 6052 TGACTCGATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCA 6111 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | | ||| | ||| | || |||||||| Sbjct 6112 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAA 6171 Query 27167 CATTCAAAAGGAGTCGACC 27185 ||| || |||| ||||||| Sbjct 6172 CATCCAGAAGGGGTCGACC 6190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 |||| || ||||| || || || | ||||||| | || || || || || || ||||| | Sbjct 6222 TGCAAATCTTTGTCAAGACGCTCAGCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCTG 6281 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 |||||| || | || || ||||| || ||||| || ||||| || ||||| || | Sbjct 6282 CCTCGATCGACAACGTAAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAGC 6341 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | || | || | ||| ||||| || | | ||| | ||| | || |||||||||| Sbjct 6342 AACGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAACA 6401 Query 27169 TTCAAAAGGAGTCGACC 27185 | || |||| ||||||| Sbjct 6402 TCCAGAAGGGGTCGACC 6418 >seq2338 Length=9794 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || ||||||||| | || || || || || || || | Sbjct 8340 CATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGACGGC 8281 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| | | ||||| || || || ||||| || ||||| || ||||| || Sbjct 8280 GGACTCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 8221 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | |||||| || | || ||| | ||| | || |||||||| Sbjct 8220 GCAGCGCCTGATCTTTGCCGGCCTCCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 8161 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | || | || |||||||| Sbjct 8160 TATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCCGCCTTCGTGGTGGCAT 8110 >seq2411 Length=24813 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 |||||| | || || ||||| ||||| || || ||||| || || | ||||| || Sbjct 4228 GGCAAGACGATCACCCTTGAGGTGGAGCCTTCGGACTCCATCGACAATGTCAAGGCCAAG 4287 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || || ||||| || ||||| || || ||||| ||||| | || | || ||||| || Sbjct 4288 ATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAG 4347 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 |||| ||| | ||| |||| || |||||||| || ||||||||||| | || | Sbjct 4348 CTGGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTC 4407 Query 27195 GTTTTGCGTTTGCGGGGTGG 27214 ||| |||| | || ||||| Sbjct 4408 GTTCTGCGCCTCCGCGGTGG 4427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434899850730240