Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1041 170 4e-37 seq1787 161 2e-34 seq1754 159 8e-34 seq2338 149 1e-30 seq2411 138 3e-27 seq262 134 3e-26 seq3336 122 2e-22 seq1956 118 2e-21 seq2994 116 9e-21 seq600 114 3e-20 seq2823 93.3 1e-13 seq3150 87.8 4e-12 >seq1041 Length=17511 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| |||||| | || || Sbjct 5003 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCC 4944 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 4943 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 4884 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| | |||||| || |||||||| ||||||||| Sbjct 4883 TGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTC 4824 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 4823 TTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 5231 AGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCC 5172 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || || | || ||||||||| Sbjct 5171 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 5112 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || || | |||||| || ||||| || ||||||||| Sbjct 5111 TGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTC 5052 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 5051 TTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 >seq1787 Length=9008 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| ||||||| ||||| | || || Sbjct 973 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 914 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 913 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 854 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||| | ||| || || |||||||| ||||||||| Sbjct 853 TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTC 794 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 793 TTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 762 >seq1754 Length=9193 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || || ||| | || |||||||| ||||||| ||||| | || || | ||| Sbjct 6198 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6139 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| |||||||| ||||| || ||||| || || | || |||||||||||||| Sbjct 6138 TGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6079 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || ||||| ||||| | |||||| || |||||||| ||||||||||| || Sbjct 6078 TTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCG 6019 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| | |||||| Sbjct 6018 GTGAGCGTCTTGACAAAGATCTGCAT 5993 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| || || ||| | || |||||||| ||||||| ||||| | || || | ||| Sbjct 6426 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6367 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 |||||||| |||||||| |||||||| ||||| || || | || |||||||||||||| Sbjct 6366 TGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6307 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || ||||| ||||| | | |||| || |||||||| ||||||||||| || Sbjct 6306 TTGGCCTTTACGTTGTCGATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCG 6247 Query 211089 GTGAGAGTCTTTACAAACACCTGCA 211113 |||| ||||| ||||| | |||| Sbjct 6246 CTGAGCGTCTTGACAAAGATTTGCA 6222 >seq2338 Length=9794 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || ||||| || ||||| || ||||||| ||||| Sbjct 8118 ACGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGT 8177 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||| ||| || ||||| ||||| || ||||| || || | || Sbjct 8178 GCGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 8237 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||| | ||| | | || |||||||| Sbjct 8238 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAG 8297 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || ||||| ||||| ||||| | |||||| Sbjct 8298 GGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 8339 >seq2411 Length=24813 Score = 138 bits (152), Expect = 3e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| |||||| | || || Sbjct 4412 AGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 4353 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || || || || || | || ||||||||| Sbjct 4352 TCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCC 4293 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||| ||| || || ||||| || ||||||||| Sbjct 4292 TGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCACCTCAAGGGTGATCGTC 4233 Query 211083 TTTCCC 211088 || ||| Sbjct 4232 TTGCCC 4227 >seq262 Length=5824 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||| | || ||||| | || |||| ||||| | || || Sbjct 3046 AGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCCGAGAGGGTGCGGCCGTCC 3105 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||| |||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 3106 TCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3165 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||| | || ||||| |||| | |||||| || |||||||| ||||||||| Sbjct 3166 TGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTC 3225 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| | ||| ||||| | |||||| Sbjct 3226 TTGCCGGTGAGCGCCTTGACAAAGATCTGCAT 3257 >seq3336 Length=58286 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||| |||||| | ||||| || ||| | |||||||| || |||| ||||| Sbjct 18585 CGCAGTCTGAGGACATGATGAAGCGTCGACCCCCGCTGGATGTTGTAGTCCGAGAGGGTG 18644 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||| |||||||||||| || ||||| | ||||| || || | || Sbjct 18645 CAGCCGTCCTCGAGCTCCTTGCCTGCGAACATCAGGCGGTTCTGGTCGGGCGGGATGCCC 18704 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||||||| ||| || ||| | || || | ||||| || |||||||| Sbjct 18705 ACCTTGTCCTGGAACTTGACCTTGACGCTGTCAATCGACTCAGACGGCTCGACCTCGAGG 18764 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||| |||| | || ||||| ||||| ||||| Sbjct 18765 GTGAGCGTCCTGCCGGTGAGCGTCTTGACAAA 18796 Score = 113 bits (124), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| || ||||| || | ||| || || || || || |||| ||||| | || Sbjct 18362 TCTGAGGACCAGATGAAGCGTCGCCTCCTTCTGTATTTTGTAGTCCGAGAGGGTGCAGCC 18421 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 || || |||| |||||| ||| |||| |||| || | ||| || || | || ||| Sbjct 18422 GTCCTCGAGCTCCTTGCCCGCGTAGATCAGGCTCTGCTCGTCGGGCGGGATGCCCGCCTC 18481 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA--GCTTTCAACCTCGAGAGTG 211076 |||||||||||| || ||||| ||||| | ||| || | || ||||| ||| Sbjct 18482 GTCCTGGATCTTGGCCTTGACGTTGTCGATCGACATAGAAGGCCT--GACATCGAGGGTG 18539 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || ||||| ||||| ||||| | |||||| Sbjct 18540 ATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 18577 >seq1956 Length=13199 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || ||||| || || || || || || || || || || | ||||| | || || || Sbjct 2535 ACGAGGTGCAGGGTCGAATCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCG 2594 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| |||||||| ||| || ||||| || || | || ||||||||||| Sbjct 2595 AGCTGCTTGCCCGCGAAGATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGA 2654 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || ||||| ||||| | ||| || || ||||| || |||| ||||||| Sbjct 2655 ATCTTGGCCTTGACGTTGTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTT 2714 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCA 211113 || ||||| ||||| || | | ||||| Sbjct 2715 CCGGTGAGCGTCTTGACGATGATCTGCA 2742 >seq2994 Length=21391 Score = 116 bits (128), Expect = 9e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || || || || |||||||| ||||| | || || | ||||| Sbjct 16543 AGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCATCC 16602 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| || || | || |||||||| Sbjct 16603 TCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 16662 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || ||||| || ||| |||| ||| || |||||||| |||||| Sbjct 16663 TGGATCTTGGCCTTGACGTTGTCAATGCTGTCCGAGGGCTCGACCTCGAGGGTGATC 16719 >seq600 Length=13348 Score = 114 bits (126), Expect = 3e-20 Identities = 150/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCG----CAAGGGTCCTTCCATCTTCCAG 210967 ||||| || ||||| || |||||||| || || | |||| | || ||| ||||| Sbjct 11087 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCAAGCGACCGTCC----TCCAG 11142 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 | ||||||| || ||||| ||||| ||| || || || || |||||| ||||||| Sbjct 11143 CAGCTTGCCCGCAAAGATGAGGCGCTGTGCCTCCGGGGGGGTGCCCTCCTTGGCCTGGAT 11202 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 |||| || ||| ||||||||||||||| || || | || ||||| |||||||| Sbjct 11203 CTTTGCCTTGACGCCCTCGATGGTGTCAGAGTGCTCGACATTTAGCGTGATGGTCTTTCC 11262 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 | || ||||| ||||| | |||||| Sbjct 11263 ATTCAGCGTCTTGACAAAGATCTGCAT 11289 >seq2823 Length=38084 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 ||| || || || || || || || | |||||||| || || | || || | || | Sbjct 13214 TAGCACGAGATGCAGGGTCGAATCCCTCTGGATGTTGTAGTCTGAGAGTGTGCGGCCGAC 13155 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || |||| |||||| |||||||| | ||| || | ||| || || | || |||||||| Sbjct 13154 CTCGAGCTCCTTGCCCGCGAAGATTAAGCGCTGCTCGTCGGGCGGGATGCCCTCCTTGTC 13095 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| || || || ||||| | ||| || || ||||| || |||| ||| Sbjct 13094 CTGGATCTTGGCCTTGACATTGTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGT 13035 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 ||| || ||| | |||| | || | |||| Sbjct 13034 CTTACCGGTGTGCATCTTGATGAAGATCTGC 13004 >seq3150 Length=27292 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||||| | || || Sbjct 100 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 41 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTC 211000 || ||||||||||| |||||||| ||||| |||||||| Sbjct 40 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159101326221380