Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1787 93.3 4e-14 seq2338 89.7 4e-13 seq1041 84.2 2e-11 seq1754 82.4 7e-11 >seq1787 Length=9008 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||| | || || || |||| || ||||| ||||| ||||| Sbjct 953 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 894 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| ||| | || ||| |||||| ||| || |||| ||| Sbjct 893 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 835 Query 39213 CGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 ||| | || || || ||| || || | ||||| | || || || ||||| || | Sbjct 834 TGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 775 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 774 CAAAGATCTGCAT 762 >seq2338 Length=9794 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||| ||||| | || || || |||| || ||||| ||| ||||| Sbjct 8148 CTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAA 8207 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| ||| | || ||| |||||| ||| || |||| ||| Sbjct 8208 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 8266 Query 39213 CGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 ||| | || || || ||| || || | ||||| | || || || ||||| || | Sbjct 8267 TGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGA 8326 Query 39272 CAAAGATTTGCAT 39284 ||||||| ||||| Sbjct 8327 CAAAGATCTGCAT 8339 >seq1041 Length=17511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | || || || |||| || ||||| |||||||| || Sbjct 5211 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAA 5152 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||||| || | || ||| |||||| ||| || |||| ||| Sbjct 5151 GATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 5093 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || || || ||| || |||| ||||| | || || || ||||| || | Sbjct 5092 TGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGA 5033 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 5032 CGAAGATCTGCAT 5020 >seq1754 Length=9193 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || ||||| | || || || |||| | ||||| |||||||| || || Sbjct 6180 TTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGATC 6121 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-C 39215 || ||||||||||||| || | || ||| |||||| |||||| |||| ||| | | Sbjct 6120 AGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGA-CGTTGTC 6062 Query 39216 CACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | || || || ||| || || | ||||| | || || || ||||| || ||||| Sbjct 6061 GATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAA 6002 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 6001 GATCTGCAT 5993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429527737883156