Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3410 116 9e-21 seq1041 116 9e-21 seq2994 113 1e-19 seq2411 111 4e-19 seq2756 109 1e-18 seq1787 100 7e-16 seq1754 98.7 2e-15 seq2338 96.9 8e-15 seq1956 91.5 4e-13 seq262 87.8 4e-12 >seq3410 Length=25263 Score = 116 bits (128), Expect = 9e-21 Identities = 139/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 7543 GGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTT 7602 |||||| ||| | || |||||| | | || | || || ||| |||||||||| || Sbjct 23427 GGTAATTATCAATTGTATAACGTTTTAGTAACATCACACGCTTTTCTTATGATTTTTTTC 23486 Query 7603 TTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGT 7662 ||||||||||| || || |||||||| |||||||| |||||| | | |||||| Sbjct 23487 TTTGTTATGCCAACAGCCATCGGAGGTTTCGGTAATTGATTTGTTCCTATTTTAATTGGT 23546 Query 7663 GCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||| |||||| ||||||| | | || || || |||||||||||| |||| ||||| Sbjct 23547 GCTTGCGATATGTCTTTTCCTCGTTTAAATAACATTAGTTTTTGATTATTACCACCTTCG 23606 Query 7723 TTATTTCTA 7731 ||| || || Sbjct 23607 TTAATTTTA 23615 >seq1041 Length=17511 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| || || || || |||| ||||| || | | || | ||| || Sbjct 5231 AGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCC 5172 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| || || |||||||| Sbjct 5171 TCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 5112 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || | ||| || | || || || | ||||||||| Sbjct 5111 TGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTC 5052 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 5051 TTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | | || | ||| || Sbjct 5003 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCC 4944 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| || || |||||||| Sbjct 4943 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 4884 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| | ||| || | || || || | ||||||||| Sbjct 4883 TGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTC 4824 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 4823 TTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 >seq2994 Length=21391 Score = 113 bits (124), Expect = 1e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || ||||| || |||| |||||||||| | || | ||||| Sbjct 16543 AGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAGAGCGTGCGACCATCC 16602 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || || ||||||||||| || || ||||||||| Sbjct 16603 TCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 16662 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 |||||||| ||| || || ||| |||| |||| || || || | |||||| Sbjct 16663 TGGATCTTGGCCTTGACGTTGTCAATGCTGTCCGAGGGCTCGACCTCGAGGGTGATC 16719 >seq2411 Length=24813 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| || || || || |||| ||||| || | | || Sbjct 4421 CGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 4362 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||| || || || || || || || || || Sbjct 4361 CGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCC 4302 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| ||| ||||||| ||| || | ||||| || | Sbjct 4301 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCACCTCAAGG 4242 Query 225673 GTGATCGTCTTGCCCGTCAAA 225693 ||||||||||||||| |||| Sbjct 4241 GTGATCGTCTTGCCCTGCAAA 4221 >seq2756 Length=33385 Score = 109 bits (120), Expect = 1e-18 Identities = 101/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 32245 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 32186 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | ||||||| |||| | | |||| || ||| || |||| Sbjct 32185 CCGTCAATTCCTTTGAGTTTCACCCTTGCGAGCGTACTCCCCAGGCGGGATACTTAACGC 32126 Query 7855 GTTAGCT 7861 ||||||| Sbjct 32125 GTTAGCT 32119 >seq1787 Length=9008 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| |||||||| | | || | || || Sbjct 973 AGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 914 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || |||||||| || || || |||||||| Sbjct 913 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 854 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || |||| | ||| || | || || || | ||||||||| Sbjct 853 TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTC 794 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 793 TTGCCGGT 786 >seq1754 Length=9193 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||| || || | || |||| |||||||| | | || | || || | ||| Sbjct 6198 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6139 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| || || || ||||||||||| || || |||||||| ||||| Sbjct 6138 TGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6079 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| || ||||| | ||| || | || || || | |||||||||||||| Sbjct 6078 TTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCG 6019 Query 225688 GT 225689 || Sbjct 6018 GT 6017 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 |||||||| || || | || |||| |||||||| | | || | || || | ||| Sbjct 6426 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6367 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| || |||||||| || ||||| ||||||||||| || || |||||||| ||||| Sbjct 6366 TGCTTGCCCGCGAAGATCAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6307 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 || ||| || ||||| | | | || | || || || | |||||||||||||| Sbjct 6306 TTGGCCTTTACGTTGTCGATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCC 6248 >seq2338 Length=9794 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || |||||||| || || || || |||| ||||||||| | | || Sbjct 8118 ACGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGT 8177 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || ||||| || || ||||| || || || |||||||| || || || Sbjct 8178 GCGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 8237 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || |||| | ||| | || || || || | Sbjct 8238 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAG 8297 Query 225672 CGTGATCGTCTTGCCCGT 225689 |||||||||||||| || Sbjct 8298 GGTGATCGTCTTGCCGGT 8315 >seq1956 Length=13199 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || ||||| || || || || || || | |||||| || | | || | || || || Sbjct 2535 ACGAGGTGCAGGGTCGAATCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCG 2594 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| || |||||||| || || ||||||||||| || || |||||||| || Sbjct 2595 AGCTGCTTGCCCGCGAAGATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGA 2654 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| || ||||| | ||| || | ||||| || | ||||| |||||| Sbjct 2655 ATCTTGGCCTTGACGTTGTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTT 2714 Query 225685 CCCGT 225689 || || Sbjct 2715 CCGGT 2719 >seq262 Length=5824 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || | || |||| || ||| || | | || | || || Sbjct 3046 AGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCCGAGAGGGTGCGGCCGTCC 3105 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||| | || |||||||| | || || ||||||||||| || || |||||||| Sbjct 3106 TCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3165 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||| | ||| || |||| | ||| || | || || || | ||||||||| Sbjct 3166 TGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTC 3225 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 3226 TTGCCGGT 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192479067007928