Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq3345 827 0.0 >seq3345 Length=67807 Score = 827 bits (916), Expect = 0.0 Identities = 787/998 (79%), Gaps = 6/998 (1%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||||| |||||| || ||| | ||| | || || | |||||||| || || Sbjct 46416 TTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTTCGGTTGTCTA 46357 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGCTT-CATCGTTGCCTTCGTCGCTGCTCC 183314 ||| | || ||||| | |||| | || |||| | | |||| || |||| || || Sbjct 46356 ATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTATCGCAGCACC 46298 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || ||||| || ||||| || || |||||||| || || | || |||||||| Sbjct 46297 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTACGGAAACAA 46238 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 ||||||||||||||| || ||||| ||| ||||| || || |||||||||| || || Sbjct 46237 CATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTTCTACCCAAT 46178 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 ||||||||| || ||| ||||||||||||| || ||||||||| |||||||||| || || Sbjct 46177 CTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCAACTAGTTGT 46118 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCT-ACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 ||||||||| ||||||| || | |||| |||| |||||||||||||| | ||||||| Sbjct 46117 TTTCCACTTCTTCATTGGTGTATG-TGCTTACATCGGTCGTGAGTGGGAGCTTTCTTACC 46059 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||||||| |||||||||||||||| || || || ||||| ||| | | Sbjct 46058 GTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGCAGCATCTG 45999 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 | || ||| | |||| || |||||||||||||||| ||||||||||| || |||| Sbjct 45998 CAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTAGGTA 45939 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 || ||| || || |||| |||||||| |||||||| |||||||||||||| ||||||| Sbjct 45938 TCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCTTATGCACC 45879 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | ||||||||||| ||||| |||||||| |||||||||||||| ||| || ||||||| Sbjct 45878 CATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGCTATGCACG 45819 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||||||| || ||||| || || | |||||||| |||||| || || ||||| | Sbjct 45818 GTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGCTAACTACG 45759 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 |||||||||||||||||||||||||||| |||||||| || || ||||| || ||||| | Sbjct 45758 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGGTTACTTAG 45699 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 ||||||| ||||||| || ||||| || ||||| || ||| | ||||||||| |||| | Sbjct 45698 GTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTTCGTCCTAG 45639 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGC-ACTATGGCATTT 184032 |||||||||||| || || |||||||| || || | ||||| ||| ||||||||||| Sbjct 45638 GTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGT-AGCTACTATGGCATTC 45580 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||||| || ||||| |||||||||||||| | | ||| ||||||||||| | ||| Sbjct 45579 AACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGTAATCAAC 45520 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 || ||||| ||| |||| |||||| | || || |||||||| |||||||||||||| Sbjct 45519 ACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGAGCGTAAC 45460 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGTC 184190 ||||||||||||||||| || || ||||||| |||||| Sbjct 45459 GCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 556 bits (616), Expect = 2e-153 Identities = 731/1013 (72%), Gaps = 0/1013 (0%) Strand=Plus/Plus Query 185961 TTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 186020 |||||| | | ||||||||||| || || ||||| || || || || || ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 186021 TTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTT 186080 | ||||| || || ||| | | || | ||||| ||||| ||||| | || || Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 186081 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTC 186140 || || ||||| || ||||| | || ||| | ||| || || ||| || || Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 186141 ACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 186200 || || || || || ||||||||| || ||||||||| || || || || | ||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 186201 CCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTG 186260 ||||| | ||||| || |||| || ||||||||| |||| || || ||| |||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 186261 GCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGT 186320 || || ||||| | |||| | | || |||||| || |||||||||| ||| |||| Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 186321 CTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTT 186380 | |||||||| ||||| ||||| || || ||||| |||||||| ||||| || || ||| Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 186381 AGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGA 186440 | || ||||| | |||||| | || || | |||||||| || || ||||| Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGT 60272 Query 186441 GTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAAT 186500 || || ||||| || | ||||| | ||||| ||||| |||||||||||||| | || Sbjct 60273 GTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAAC 60332 Query 186501 CCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCAT 186560 ||||||||||||||||| ||||| ||||||||||||||||| | || | || || ||| Sbjct 60333 CCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCAT 60392 Query 186561 GGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCA 186620 |||| |||||||| || ||||||| |||||||| || || ||||| ||| ||| Sbjct 60393 GGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCA 60452 Query 186621 TTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCA 186680 ||| | | || ||| |||||| || || || ||||| ||||| ||| | |||||||| Sbjct 60453 TTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCT 60512 Query 186681 CAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTT 186740 ||||| || || |||| || || ||||||||| | || ||||||||||| || || Sbjct 60513 CAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTA 60572 Query 186741 CCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGT 186800 || || ||| | ||||| | | || || ||| | ||| | || || ||||| ||| Sbjct 60573 CCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGT 60632 Query 186801 GCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTC 186860 || || || || || || ||| | ||||| ||||| || ||||| ||||| || ||| Sbjct 60633 GCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTC 60692 Query 186861 TATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAA 186920 || || || || | ||| | ||||||||| | ||||| |||||||| || |||||| Sbjct 60693 TACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAA 60752 Query 186921 CCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || ||||||||||| | || ||||| || || | ||| | || ||||| || Sbjct 60753 CCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622043868697440