Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3345 848 0.0 >seq3345 Length=67807 Score = 848 bits (940), Expect = 0.0 Identities = 817/1040 (79%), Gaps = 6/1040 (1%) Strand=Plus/Minus Query 163918 CTGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTT 163977 |||||| |||||||| ||| | |||||||| || || | | || | |||||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 163978 CGGCGTCCTGATGATTCCCTGC-CTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCA 164036 ||| || ||| |||||| | || || |||| | | || || | | || || || | Sbjct 46366 CGGTTGTCTAATG-TTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTGCTTTTA 46308 Query 164037 TCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGT 164096 ||| || ||||| || || |||||||| ||||| || || || |||||||| || | | Sbjct 46307 TCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTT 46248 Query 164097 ATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACT 164156 | |||||||||||||||||||||||||| | || ||| |||||||||||| | |||| Sbjct 46247 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACT 46188 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCC 164216 ||||||| ||||||||||| || | || || ||||| |||||||||||| ||| || Sbjct 46187 TCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACC 46128 Query 164217 AACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAAC 164276 |||| ||||| ||||||||| | ||||| | | ||||||||| |||||||||||||| | Sbjct 46127 AACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGC 46068 Query 164277 TTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTG 164336 ||||||||||||| ||||||||||| ||||| || || || | ||| ||||| || |||| Sbjct 46067 TTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTG 46008 Query 164337 CAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGC 164396 |||| |||||| ||| | |||| || ||||||||||||||||||| |||| |||| Sbjct 46007 CAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGC 45948 Query 164397 CTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCC 164456 |||| || |||||||| || ||||||| |||| | || ||||| |||||||||||||||| Sbjct 45947 CTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCC 45888 Query 164457 TCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTG 164516 | |||||||| ||||| ||||| || || || ||||| || || |||||||| ||| | Sbjct 45887 TTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAG 45828 Query 164517 CAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCC 164576 | ||||||||||| || || ||||| || || | ||||| || || || || || || Sbjct 45827 CTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTG 45768 Query 164577 AGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACG 164636 ||||| ||||||||||| ||||| |||||||| || |||||||||||||| ||||||| Sbjct 45767 CTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACG 45708 Query 164637 GTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACT 164696 ||||||| |||||||| | |||||||||||||| ||||||||||| ||| | || |||| Sbjct 45707 GTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACT 45648 Query 164697 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGC-ACC 164755 || |||| | || ||||| || || ||||||||||| || || |||| || ||| || Sbjct 45647 TCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGT-AGCTACT 45589 Query 164756 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164815 |||||||||||||| ||||||||||||||||||||||| | | ||| || |||||| Sbjct 45588 ATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGT 45529 Query 164816 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCAC 164875 || ||||||| ||||| ||| |||| |||||| | || || |||||||| |||||| Sbjct 45528 GTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCAC 45469 Query 164876 GAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGAACACT-CCTGTTGC 164934 |||||||| ||||||||||||||||| || || ||||||| |||| | || || ||||| Sbjct 45468 GAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAG-TCTCTACCAGTTGC 45410 Query 164935 TCTCAAGGCACCTGCTGTTG 164954 ||| || || ||||||| Sbjct 45409 TCTAGTTGCTCCAGCTGTTG 45390 Score = 684 bits (758), Expect = 0.0 Identities = 762/1017 (75%), Gaps = 0/1017 (0%) Strand=Plus/Plus Query 165153 TTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 165212 |||||| | |||| |||||||| || | |||||||||||||| ||||| ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 165213 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 165272 |||||||| || || ||| | || ||| | || |||||||| ||||| | ||||||| Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 165273 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 165332 || || |||||| |||||||| || || ||||| | || || || ||||| || Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 165333 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 165392 ||||| || || |||||||| || || ||||||||| || || || ||| | ||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 165393 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 165452 ||||| | ||||| ||| ||| || |||| |||| |||| || || ||| ||||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 165453 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 165512 || || ||||| | |||| | || |||||| ||| | |||||||| | || || Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 165513 CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTT 165572 | | ||||||||||||||||| || || |||||||||||||| || || ||||||||| Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 165573 AGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGG 165632 | ||||| || | || ||| | || ||| | |||||||| ||||| || || Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGT 60272 Query 165633 GTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAAT 165692 || || ||||| ||||| ||||| || ||||| ||||| ||||| |||||||| || || Sbjct 60273 GTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAAC 60332 Query 165693 CCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCAT 165752 || || ||||||||||||||||| |||||| | || || || || || | ||| |||||| Sbjct 60333 CCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCAT 60392 Query 165753 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCA 165812 |||| || |||||||| ||| | | ||||||||||| || ||||||||| ||| Sbjct 60393 GGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCA 60452 Query 165813 TTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCT 165872 || | || || ||| || ||||| || ||||| ||||| ||||||||||||||| Sbjct 60453 TTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCT 60512 Query 165873 CAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTT 165932 |||||||||||| |||| ||| || ||||||||| | |||||||| ||||| || || Sbjct 60513 CAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTA 60572 Query 165933 CCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGT 165992 || || || | ||||||||| | || ||||| | ||| | ||||| || || ||| Sbjct 60573 CCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGT 60632 Query 165993 GCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTC 166052 || || ||||| || || || ||| ||||||| || || || || || || ||||| ||| Sbjct 60633 GCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTC 60692 Query 166053 TATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAA 166112 || |||||||||| ||| || |||||||| ||||||| ||| ||||| | ||| ||| Sbjct 60693 TACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAA 60752 Query 166113 CCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||||||| ||||| | |||||||| || || | ||| | || ||||| |||||| Sbjct 60753 CCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTTAA 60809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557630616039840