Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1041 102 2e-16 seq2994 87.8 4e-12 seq1754 84.2 5e-11 >seq1041 Length=17511 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || || || ||||| || ||||||||||| || | | || | Sbjct 5238 GAGGCGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCG 5179 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||| || || || || || |||||||| || | ||||||||| | || ||| || || Sbjct 5178 CCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTC 5119 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | ||| || ||| || || || || Sbjct 5118 CTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGT 5059 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| ||||||| |||||| Sbjct 5058 GATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || || || ||||| || ||||||||||| || | | || | Sbjct 5010 GAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCG 4951 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||| || || || || || |||||||| || | ||||||||| | || ||| || || Sbjct 4950 CCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 4891 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | ||| || ||| || || || || Sbjct 4890 CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGT 4831 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| ||||||| |||||| Sbjct 4830 GATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 >seq2994 Length=21391 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||| || ||||| || || |||||||||||||||| | || | Sbjct 16536 GAGGCGGAGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAGAGCGTGCG 16595 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || ||||| || || | ||||||||| | || ||| || || Sbjct 16596 ACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGGATGCCCTC 16655 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||| | || | |||||| || ||| || || || || Sbjct 16656 CTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGCTGTCCGAGGGCTCGACCTCGAGGGT 16715 Query 152066 AAT 152068 || Sbjct 16716 GAT 16718 >seq1754 Length=9193 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| | || || || || ||| | || |||||||||||||| | | || | Sbjct 6211 GAGGCGGAGCCCGAGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCG 6152 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || | || || || |||||||| || | ||||||||| | || ||| || || Sbjct 6151 GCCGTCCGCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTC 6092 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || ||||| ||||| | || | ||| || ||| || || || || Sbjct 6091 CTTGTCCTGGATTTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGT 6032 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| || |||| |||||| Sbjct 6031 GATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 5993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153770359281452