Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3345 875 0.0 >seq3345 Length=67807 Score = 875 bits (970), Expect = 0.0 Identities = 823/1040 (79%), Gaps = 6/1040 (1%) Strand=Plus/Minus Query 177588 CTGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTT 177647 |||||| |||||||| ||| | || || || | || | || || | |||||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 177648 CGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTT-CATCGTCGCTTTCG 177706 |||| || ||| ||||||| || || | ||| | || | || | | | ||||| Sbjct 46366 CGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATT-TCAGCTTACGTTATTGCTTTTA 46308 Query 177707 TCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGT 177766 |||| || ||||| || || ||||| || |||||||| || || |||||||| || | | Sbjct 46307 TCGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTT 46248 Query 177767 ATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACT 177826 | || ||||||||||| ||||||||||| ||||| ||| |||||||| ||| | |||| Sbjct 46247 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACT 46188 Query 177827 TCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCC 177886 |||| || ||||||||||| ||||| ||||||||||||| ||||| |||||| ||| || Sbjct 46187 TCTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACC 46128 Query 177887 AACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAAC 177946 |||| ||| | ||||||||| | || ||| | | ||| ||||| |||||||||||||| | Sbjct 46127 AACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGC 46068 Query 177947 TTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCG 178006 |||||||||| |||||||||||||| ||||||||||| || | ||| |||||||| || | Sbjct 46067 TTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTG 46008 Query 178007 CAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGC 178066 |||||||||| |||||| | | || || ||||||||||||||||||| || | ||||| Sbjct 46007 CAGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGC 45948 Query 178067 CCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCC 178126 | || |||||| ||| || ||||||| ||||||||| |||||||| ||||||||||||| Sbjct 45947 CTCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCC 45888 Query 178127 TGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTG 178186 | |||||||| ||||||||| | || || |||||||| || ||||||||||| ||| | Sbjct 45887 TTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAG 45828 Query 178187 CGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTC 178246 | |||||||||||||| || ||||| || || | |||||||| || ||||||||| | Sbjct 45827 CTATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTG 45768 Query 178247 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATG 178306 ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 45767 CTAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACG 45708 Query 178307 GTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACT 178366 ||||||| ||||| || ||||||||||||| || ||||||||||| ||| | || |||| Sbjct 45707 GTTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACT 45648 Query 178367 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGC-ACC 178425 || |||| | || ||||| || || ||||||||||| || || | ||||| ||| || Sbjct 45647 TCGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGT-AGCTACT 45589 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAA 178485 |||||||||||||| ||||||||||||||||||||||| | | ||| || || Sbjct 45588 ATGGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGT 45529 Query 178486 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAC 178545 || | ||||| ||||| ||| |||| |||||| | || ||||||||||| |||||| Sbjct 45528 GTAATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCAC 45469 Query 178546 GAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAAAGCACT-CCTGTTGC 178604 |||||||| ||||||||||||||||| || || ||||||| || | | || || ||||| Sbjct 45468 GAGCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTG-AGTCTCTACCAGTTGC 45410 Query 178605 TCTCACCGCACCTGCTGTTG 178624 ||| || || ||||||| Sbjct 45409 TCTAGTTGCTCCAGCTGTTG 45390 Score = 691 bits (766), Expect = 0.0 Identities = 754/1001 (75%), Gaps = 0/1001 (0%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTC 178910 ||||||||||| |||||||| || |||||||| ||||| ||||| || |||||||| ||| Sbjct 59805 GATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGACTTCTTCTATTC 59864 Query 178911 CCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGG 178970 || ||| | | | || | || |||||||| || || | || ||||| || || ||| Sbjct 59865 CCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTCGTAACATCTTGG 59924 Query 178971 TATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTA 179030 || |||||||| | || ||||| || || |||||||| ||||| |||||||||||| Sbjct 59925 TACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTAACTGCTGCTGTA 59984 Query 179031 TCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAG 179090 || ||||||||| || | | || || || ||||| ||| | ||||| || ||||| || Sbjct 59985 TCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGACCTGAAGCACAA 60044 Query 179091 GGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGT 179150 || || || || ||| ||||| |||| || || ||| ||||| | || || |||||| Sbjct 60045 GGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATTGCACTACACGGT 60104 Query 179151 GCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATT 179210 | || | | | || |||||| ||| | |||||||| ||||| ||| |||| |||||| Sbjct 60105 TCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGTTTAGTAGGTATT 60164 Query 179211 CGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTC 179270 ||||||||||| |||||||| || ||||||||||| || || || || | ||||| || Sbjct 60165 CGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTTACAGTTTTCCTA 60224 Query 179271 ATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATT 179330 | || ||| | || || | ||||||||||| || ||||| || || || ||| Sbjct 60225 GTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGTGTAGCGGCAATT 60284 Query 179331 TTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATG 179390 ||||| ||||| || |||||||| || |||||||||||||| || ||||| ||||||||| Sbjct 60285 TTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAACCCATTCCACATG 60344 Query 179391 ATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTA 179450 ||||| ||||| |||||||| || || || || || ||||| ||||||||||| || ||| Sbjct 60345 ATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCATGGTGCGACTGTA 60404 Query 179451 GAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACA 179510 |||||||| || || ||||| |||| | || || ||| |||||| || ||| Sbjct 60405 GAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCATTCACTCCAACA 60464 Query 179511 CAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGT 179570 ||| ||| ||||| || || ||||||||||| |||||||||||||||||||| |||||| Sbjct 60465 CAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATTTTTGGT 60524 Query 179571 ATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGT 179630 | || ||| || ||||||||| |||| ||||| ||| | || || || || ||| Sbjct 60525 GTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTACCAGTAGCTGGT 60584 Query 179631 CTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTTT 179690 | ||||| | || |||||| | ||| | ||||| ||||| | || || || || Sbjct 60585 ATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGTGCATACGATTTC 60644 Query 179691 GTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAAC 179750 ||||| |||||| | ||||| ||||| || ||||| ||||| || ||||| || || ||| Sbjct 60645 GTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTCTACACGAAAAAC 60704 Query 179751 ATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAAC 179810 | ||| | ||||||||| | ||||| |||||||| || |||||||| ||||||||| Sbjct 60705 AACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAACCTCATGAAAAC 60764 Query 179811 TTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || | || ||||| || ||| | ||| | || ||||| || Sbjct 60765 TTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCT 60805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596281767497920