Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq3345 848 0.0 >seq3345 Length=67807 Score = 848 bits (940), Expect = 0.0 Identities = 791/1005 (79%), Gaps = 0/1005 (0%) Strand=Plus/Minus Query 169342 CTGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTT 169401 |||||| |||||||| ||| | || || ||||| ||| | || || | |||||||| Sbjct 46426 CTGGGAGCAATTCTGCGCATGGATCACTTCAACTGAGAACAGACTATACATTGGTTGGTT 46367 Query 169402 CGGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCAT 169461 ||| || ||| |||| || || |||| | | || | | || || || || Sbjct 46366 CGGTTGTCTAATGTTCCCTACTCTACTTACAGCTATTTCAGCTTACGTTATTGCTTTTAT 46307 Query 169462 CGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTA 169521 || || || || || || ||||| || ||||| || || |||||||||||||| | || Sbjct 46306 CGCAGCACCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTGCTGGTTCTCTACTTTA 46247 Query 169522 TGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTT 169581 || ||||||||||||||||||||||| || || ||| ||||| |||||| ||||||| Sbjct 46246 CGGAAACAACATCATCTCTGGTGCTGTAGTTCCAAGTTCAAACGCTATCGGTGTTCACTT 46187 Query 169582 CTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCA 169641 ||| || ||||||||||| || ||||||| ||| | |||||||||||| ||| ||| Sbjct 46186 CTACCCAATCTGGGAAGCTGCTTCAATCGATGAGTGGCTATACAACGGTGGTACTTACCA 46127 Query 169642 ACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATT 169701 ||| ||||| ||||||||| |||| || | | ||||||||| |||||||||||||| | Sbjct 46126 ACTAGTTGTTTTCCACTTCTTCATTGGTGTATGTGCTTACATCGGTCGTGAGTGGGAGCT 46067 Query 169702 GTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGC 169761 || || ||||| |||||||| || |||||||||||||||| ||| ||||| || || || Sbjct 46066 TTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTTCTCAGCTCCAGTAGCTGC 46007 Query 169762 AGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCC 169821 ||| || || || ||| | ||||||| | || ||||| || ||||| || | |||||| Sbjct 46006 AGCATCTGCAGTATTCGTAATCTACCCAATCGGTCAAGGTTCTTTCTCAGATGGTATGCC 45947 Query 169822 TCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCT 169881 ||| |||||||| || || || |||| |||||| || ||||||||||||||||||||||| Sbjct 45946 TCTAGGTATCTCTGGTACTTTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCCT 45887 Query 169882 CATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGC 169941 |||||||| |||||||||||||||||||| || || || ||||| ||||| || || Sbjct 45886 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTATTCGGTGGTTCTCTATTCTCAGC 45827 Query 169942 GATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCA 170001 ||||||||| || || ||||| ||| |||||||||| || |||||||| || Sbjct 45826 TATGCACGGTTCTCTAGTAACTTCATCTCTAATCCGTGAAACTACTGAGAACGAATCTGC 45767 Query 170002 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGG 170061 ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 45766 TAACTACGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATCGTTGCAGCTCACGG 45707 Query 170062 TTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTT 170121 |||||| ||||| || |||||||||||||||| ||||||||||| ||| |||| ||||| Sbjct 45706 TTACTTAGGTCGTCTATTCTTCCAATACGCTTCATTCAACAACTCACGTGCACTTCACTT 45647 Query 170122 CTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGAT 170181 | |||| | || ||||| || ||||| |||||||| || || | ||||| | || || Sbjct 45646 CGTCCTAGGTGCTTGGCCAGTAGTTGGTATCTGGTTAACATCTATGGGTGTAGCTACTAT 45587 Query 170182 GGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGT 170241 ||| |||||||| ||||||||||||||||||||||| | | ||| || |||||||| Sbjct 45586 GGCATTCAACCTAAACGGTTTCAACTTCAACCAGTCAGTTGTAGATTCACAAGGTCGTGT 45527 Query 170242 GCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGA 170301 ||||||| ||||| ||| |||| |||||| | || || |||||||| |||||||| Sbjct 45526 AATCAACACTTGGGCTGACATTCTTAACCGTTCAAACCTAGGTATGGAAGTTATGCACGA 45467 Query 170302 GCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGAGTC 170346 |||||| ||||||||||||||||| || || ||||||| |||||| Sbjct 45466 GCGTAACGCTCACAACTTCCCTCTAGATCTAGCTGCTGGTGAGTC 45422 Score = 623 bits (690), Expect = 1e-173 Identities = 747/1015 (74%), Gaps = 0/1015 (0%) Strand=Plus/Plus Query 170595 TTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGA 170654 |||||| | | ||||||||||| || ||||| || || || || || || ||||||||| Sbjct 59793 TTCGATCTTATTGATGACTGGCTAAAGCGTGACCGTTTCGTTTTCGTTGGATGGTCTGGA 59852 Query 170655 CTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTT 170714 |||||||| || || ||| | || || | || || ||||| || || | || || Sbjct 59853 CTTCTTCTATTCCCATGTGCATTCCTAGCTGTAGGTGGTTGGCTAACTGGTATTACTTTC 59912 Query 170715 GTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTT 170774 || ||| ||||||||| ||||| || |||||||||| ||| ||||| ||| ||||| Sbjct 59913 GTAACATCTTGGTACACTCACGGTCTAGCAAGTTCGTTCCTAGAAGGATGTAACTTCCTA 59972 Query 170775 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 170834 || || ||||| || || |||||| | ||||||||| || || || || | ||||| Sbjct 59973 ACTGCTGCTGTATCTACTCCTGCTAACAGTATGGGTCACTCACTACTACTTATCTGGGGA 60032 Query 170835 CCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTG 170894 ||||| | || || || || || ||||| ||| |||| || || ||| |||| | Sbjct 60033 CCTGAAGCACAAGGTGACATCACTCGTTGGTTCCAAATTGGTGGTCTTTGGGCTTTTATT 60092 Query 170895 GCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGT 170954 || || ||||| | |||| | | || |||||| ||| | |||||||| ||| |||| Sbjct 60093 GCACTACACGGTTCGTTTGGTGTAATTGGTTTCTGTCTTAGACAGTTTGAGATCGCTCGT 60152 Query 170955 CTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTC 171014 | ||||| ||| | || ||||| |||||||||||||||||||| ||||| || || || Sbjct 60153 TTAGTAGGTATTCGTCCTTACAACGCAATCGCTTTCTCTGGTCCAATCGCCGTATTCGTT 60212 Query 171015 AGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGA 171074 | || ||||| | || ||| | || || ||||||||||||| ||||| ||||| Sbjct 60213 ACAGTTTTCCTAGTTTACCCTTTAGGTCAAGCAAGTTGGTTCTTTGCACCAAGTTTTGGT 60272 Query 171075 GTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAAT 171134 || || ||||| ||||| ||||| || ||||| |||||||||||||||||||| || || Sbjct 60273 GTAGCGGCAATTTTCCGTTTCCTTCTTTTCCTACAAGGTTTCCACAACTGGACTCTTAAC 60332 Query 171135 CCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCAT 171194 ||||| || |||||||| || || |||||||| || ||||| || || | ||| |||||| Sbjct 60333 CCATTCCACATGATGGGCGTAGCTGGTATCCTTGGTGGTGCCTTACTATGTGCTATTCAT 60392 Query 171195 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCA 171254 |||| || |||||||| ||| | | |||||||||||| || ||||| || ||| Sbjct 60393 GGTGCGACTGTAGAGAACACTCTTTTCGAAGATGGTGATGCTGCGAACACTTTCCGTGCA 60452 Query 171255 TTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCG 171314 || | || || |||||||| || || ||||| ||||| || ||||||||||| Sbjct 60453 TTCACTCCAACACAATCAGAAGAGACTTACTCAATGGTTACTGCAAACCGTTTCTGGTCT 60512 Query 171315 CAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTT 171374 |||||||||||| | || ||| || ||||||||||| || ||||| ||||| || || Sbjct 60513 CAGATTTTTGGTGTTGCATTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTCGTA 60572 Query 171375 CCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGG 171434 || || ||| | ||| ||| | || ||| | ||| | || || || || | Sbjct 60573 CCAGTAGCTGGTATGTGGACAAGTGCGATCGGTATTGTAGGTTTAGCACTAAACCTGCGT 60632 Query 171435 GCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTC 171494 || || |||||||| || ||| | ||||| |||||||| || || ||||| || ||| Sbjct 60633 GCATACGATTTCGTTTCGCAAGAGCTTAGAGCCGCAGAAGACCCTGAATTCGAAACATTC 60692 Query 171495 TATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAA 171554 || || || |||| ||| | ||||||||| | ||||| |||||||| || ||| ||| Sbjct 60693 TACACGAAAAACAACCTTCTAAATGAAGGTATCCGTGCGTGGATGGCTGCACAAGATCAA 60752 Query 171555 CCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTT 171609 || ||||||||||| | ||||| ||||| || ||||| ||||| || || |||| Sbjct 60753 CCTCATGAAAACTTCATCTTCCCTGAGGAGGTACTACCACGTGGAAACGCCCTTT 60807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592173142738240