Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1041 158 3e-33 seq1787 152 1e-31 seq2994 141 2e-28 seq2338 140 7e-28 seq2411 136 8e-27 seq1754 132 1e-25 seq262 122 2e-22 seq1956 118 2e-21 seq2823 114 3e-20 seq600 109 1e-18 seq3336 95.1 3e-14 seq196 86.0 1e-11 >seq1041 Length=17511 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || || || || | || || || |||||||||||||| | | Sbjct 5018 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 4959 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || ||||||| || || ||||| ||| Sbjct 4958 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGG 4899 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| | ||| || | ||||| Sbjct 4898 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACC 4839 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | ||||| ||||| |||||||| Sbjct 4838 TCGAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 4792 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || || || || | || || || |||||||||||||| | Sbjct 5246 CCACCGCGGAGGCGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 5187 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || || || ||||||| ||| || ||||| ||| Sbjct 5186 AGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGG 5127 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | || || | ||| || | ||||| Sbjct 5126 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACC 5067 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || | ||||| ||||| |||||||| Sbjct 5066 TCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCAT 5020 >seq1787 Length=9008 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||| ||||| || || || || | || || || ||||||||||| || | Sbjct 988 CCACCACAAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 929 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||||||||||| || || ||||| || Sbjct 928 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 869 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | |||| | |||||| | ||||| Sbjct 868 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACC 809 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | ||||| || || |||||||| Sbjct 808 TCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 762 >seq2994 Length=21391 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || |||||||| | ||| ||| || ||||||||||| || | Sbjct 16527 ACCGCCACGGAGGCGGAGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGA 16586 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||| |||||||| || || || || || || || | || || ||||| ||| Sbjct 16587 GAGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGG 16646 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||| || || ||| | || || ||||||| | ||||| Sbjct 16647 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGCTGTCCGAGGGCTCGAC 16706 Query 283052 TTCGAGAGTGATC 283064 ||||| |||||| Sbjct 16707 CTCGAGGGTGATC 16719 >seq2338 Length=9794 Score = 140 bits (154), Expect = 7e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || || || || | || || || ||||| ||||| || | Sbjct 8113 CCACCACGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAG 8172 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || ||||||||||||| || || ||||| || Sbjct 8173 AGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 8232 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | |||| | ||||| | ||||| Sbjct 8233 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACC 8292 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | ||||| || || |||||||| Sbjct 8293 TCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 8339 >seq2411 Length=24813 Score = 136 bits (150), Expect = 8e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || || || || | ||| || || |||||||||||||| | Sbjct 4428 ACCACCGCGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 4369 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || || |||||||| | || || || || || Sbjct 4368 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGG 4309 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || || | ||||| | |||||||| || || Sbjct 4308 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGAGTCCGAAGGCTCCAC 4249 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || ||||||||||| ||| |||| Sbjct 4248 CTCAAGGGTGATCGTCTTGCCCTGCAAA 4221 >seq1754 Length=9193 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||||||||| || | || |||||||| ||| | || || || || || |||||| Sbjct 6180 TTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGATC 6121 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||| || ||||||||||| ||||| || || || ||| | ||| Sbjct 6120 AGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCG 6061 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || | ||| || | ||||| ||||| ||||||||||| || || | ||||| || || Sbjct 6060 ATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAG 6001 Query 283092 ATCTGCAT 283099 |||||||| Sbjct 6000 ATCTGCAT 5993 Score = 125 bits (138), Expect = 1e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||||||||| || | || |||||||| ||| | || || || || || |||||| Sbjct 6408 TTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGATC 6349 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | ||||| ||||| ||| || ||||||||||| ||||| || || |||||| | ||| Sbjct 6348 AGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTTACGTTGTCG 6289 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || | | | || | ||||| ||||| ||||||||||| || | | ||||| || || Sbjct 6288 ATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGCTGAGCGTCTTGACAAAG 6229 Query 283092 ATCTGCA 283098 || |||| Sbjct 6228 ATTTGCA 6222 >seq262 Length=5824 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || ||||| || || || || | || | || ||||| | |||||| | Sbjct 3031 CCACCGCGTAGGCGGAGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCCGAG 3090 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || | || || ||||| || || || ||||| ||| Sbjct 3091 AGGGTGCGGCCGTCCTCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGCGGG 3150 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||| | || || ||| | |||| | ||| || | ||||| Sbjct 3151 ATGCCCTCCTTGTCCTGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTCGACC 3210 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | | ||| || || |||||||| Sbjct 3211 TCGAGGGTGATCGTCTTGCCGGTGAGCGCCTTGACAAAGATCTGCAT 3257 >seq1956 Length=13199 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || |||||||| | || |||||||| ||||| || || || || || ||| Sbjct 2553 TCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 2612 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| || ||||| ||| || ||||||||||| || ||||| || || ||| | Sbjct 2613 ATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 2672 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| | |||||| || || || || || |||| |||||| || || | ||||| ||| Sbjct 2673 TCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTTCCGGTGAGCGTCTTGACG 2732 Query 283089 AATATCTGCA 283098 | ||||||| Sbjct 2733 ATGATCTGCA 2742 >seq2823 Length=38084 Score = 114 bits (126), Expect = 3e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 |||||||||||||| | || |||||||| |||| || | || || || ||||| || Sbjct 13186 TGGATGTTGTAGTCTGAGAGTGTGCGGCCGACCTCGAGCTCCTTGCCCGCGAAGATTAAG 13127 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 || || | ||| ||| || ||||||||||| |||||||| || || || | ||||| Sbjct 13126 CGCTGCTCGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATC 13067 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 | |||||| || || || || || |||| ||||||||| || |||| | ||| ||| Sbjct 13066 GAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTTACCGGTGTGCATCTTGATGAAGATC 13007 Query 283095 TGC 283097 ||| Sbjct 13006 TGC 13004 >seq600 Length=13348 Score = 109 bits (120), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 282880 GCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGC 282939 ||||||| || |||| ||| | ||| || || |||||||||||||| | ||| || Sbjct 11070 GCAGGCGCAGCACCAAATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCAAGC 11129 Query 282940 GGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCT 282999 | || ||||| || | || || |||||||| | || ||| || || | |||| Sbjct 11130 GACCGTCCTCCAGCAGCTTGCCCGCAAAGATGAGGCGCTGTGCCTCCGGGGGGGTGCCCT 11189 Query 283000 CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAG 283059 ||||| | ||||||||||| || ||| ||||| ||||| || ||||| | || | Sbjct 11190 CCTTGGCCTGGATCTTTGCCTTGACGCCCTCGATGGTGTCAGAGTGCTCGACATTTAGCG 11249 Query 283060 TGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || ||| ||||| || || |||||||| Sbjct 11250 TGATGGTCTTTCCATTCAGCGTCTTGACAAAGATCTGCAT 11289 >seq3336 Length=58286 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||||||| | ||| || || || || |||||||| | || |||| ||| ||| Sbjct 18366 AGGACCAGATGAAGCGTCGCCTCCTTCTGTATTTTGTAGTCCGAGAGGGTGCAGCCGTCC 18425 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || || | || || || |||||| | || | ||| ||| || ||| ||| ||| Sbjct 18426 TCGAGCTCCTTGCCCGCGTAGATCAGGCTCTGCTCGTCGGGCGGGATGCCCGCCTCGTCC 18485 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC 283067 |||||||| || || ||| | ||||| | |||| ||| ||||| ||||||||| Sbjct 18486 TGGATCTTGGCCTTGACGTTGTCGATCGACATAGAAGGCCTGACATCGAGGGTGATCGTC 18545 Query 283068 TTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || | ||||| || || |||||||| Sbjct 18546 TTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 18577 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 |||||||||||||| | || |||| ||| ||||| || | || || || || |||| Sbjct 18621 TGGATGTTGTAGTCCGAGAGGGTGCAGCCGTCCTCGAGCTCCTTGCCTGCGAACATCAGG 18680 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 || | ||||| ||| || ||| ||||||| |||| ||| | || ||| | || || Sbjct 18681 CGGTTCTGGTCGGGCGGGATGCCCACCTTGTCCTGGAACTTGACCTTGACGCTGTCAATC 18740 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 | || || | ||||| ||||| |||| |||| | || || | ||||| || || || Sbjct 18741 GACTCAGACGGCTCGACCTCGAGGGTGAGCGTCCTGCCGGTGAGCGTCTTGACAAAGATT 18800 Query 283095 TGCAT 283099 | ||| Sbjct 18801 TTCAT 18805 >seq196 Length=16868 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 316183 TAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 316242 || ||||| ||||||||| ||||| || | ||| || || | ||||||||||||||| Sbjct 5906 TAGCGCCAGCGGATGTACTCGTTGGGGGTGAGGTCGAGGTGGTGCTCGATGTGGTGGAAC 5965 Query 316243 GCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAAC 316289 |||||||| |||||||| || | ||| || || |||||||| || Sbjct 5966 GCGTGCTGCGCCACGTAGGCGACGCGCGCGTTCGGGTGCTTCCACAC 6012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046693440487448