Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1787 120 2e-22 seq1041 120 2e-22 seq2338 105 5e-18 seq2411 95.1 9e-15 seq1754 91.5 1e-13 seq2705 82.4 5e-11 >seq1787 Length=9008 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| |||||||||||||| | ||| ||| |||| || Sbjct 971 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTC 912 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||||||||||| |||||||| || | || | || ||||| ||| Sbjct 911 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 852 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | || || | ||| | | || ||||| | || |||||||| Sbjct 851 GATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGTGATCGTCTT 792 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| || ||||| |||||| Sbjct 791 GCCGGTGAGCGTCTTGACAAAGATCTGCATG 761 >seq1041 Length=17511 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| || | ||| |||| |||| || Sbjct 5229 CACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGCCCGTCCTC 5170 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||||| ||||||||| || | || | || ||||| ||| Sbjct 5169 GAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 5110 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || | ||| | | || ||||||| || |||||||| Sbjct 5109 GATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGACCTCCAGGGTGATCGTCTT 5050 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| |||||||| |||||| Sbjct 5049 GCCAGTGAGCGTCTTGACGAAGATCTGCATG 5019 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| || | || |||| |||| || Sbjct 5001 CACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGCCCGTCCTC 4942 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || ||||||| |||||||| || | || | || ||||| ||| Sbjct 4941 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 4882 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || | ||| | | || ||||| | || |||||||| Sbjct 4881 GATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTT 4822 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 || ||||| ||||| |||||||| ||||||| Sbjct 4821 GCCAGTGAGCGTCTTGACGAAGATCTGCATGA 4790 >seq2338 Length=9794 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||| |||||||| | ||| ||| |||| || Sbjct 8130 CACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTC 8189 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| ||||||||||||| |||||||| || | || | || ||||| ||| Sbjct 8190 GAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 8249 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | || || | ||| || | || ||||| | || |||||||| Sbjct 8250 GATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGACCTCGAGGGTGATCGTCTT 8309 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| || ||||| |||||| Sbjct 8310 GCCGGTGAGCGTCTTGACAAAGATCTGCATG 8340 >seq2411 Length=24813 Score = 95.1 bits (104), Expect = 9e-15 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| |||||| ||||||||||| || | || ||| |||| ||| Sbjct 4409 ACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCC 4350 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||||||||||| | || | || ||||| ||| Sbjct 4349 AGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGG 4290 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||| ||| | | |||||||| | || ||||||| Sbjct 4289 ATCTTGGCCTTGACATTGT--CGATGGAGTCCGAAGGCTCCACCTCAAGGGTGATCGTCT 4232 Query 44307 TTCCC 44311 | ||| Sbjct 4231 TGCCC 4227 >seq1754 Length=9193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||| || || | |||| |||||||||||||| | ||| ||| |||| | ||| Sbjct 6198 AGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGC 6139 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| || || ||||||| |||||||| || | || | || ||||| ||| || Sbjct 6138 TGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATT 6079 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | | | || | ||| | | || ||||| | || |||||||| || Sbjct 6078 TTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCG 6019 Query 44312 GTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||||| ||||| || ||||| ||||||| Sbjct 6018 GTGAGCGTCTTGACAAAGATCTGCATGA 5991 >seq2705 Length=11910 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/227 (69%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| | || |||||| || | ||||||||||| | ||||| ||| ||| | Sbjct 7525 CCTCCTCGCAGCCGCAGCACCAGATGGATCGTGCTCTCCTGCTCGATGTCGTAGTCGCCA 7466 Query 44171 AGTTGGCGCTC--GTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 | ||| || |||||| |||||||| ||| | ||||| | ||||||| | | | Sbjct 7465 A--TGGTCTTCCGGTCGTCAAGCTGCTTGCCGCCGAAGATGAGCCGCTGCTCCTTGGGCG 7408 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT-TCCTATGGTGTCGGCGGATTCC 44287 | | || ||||| ||| ||||| || | || || | || || ||| | ||| Sbjct 7407 GGATGCCCTCCTTGTCCTGAATCTT-GGCCTTAACGTCGGCGATCGTATCGCCTTCCTCC 7349 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTG 44334 || |||||||| | |||||| |||| | ||||| | |||||| || Sbjct 7348 ACGTCCACCGTCACCGTCTTCCCCGACAACGTCTTGATGAAGATCTG 7302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359975430249204