Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1041 141 2e-28 seq2994 134 3e-26 seq1787 129 1e-24 seq1956 118 3e-21 seq1754 118 3e-21 seq2411 116 9e-21 seq2338 114 3e-20 seq262 95.1 3e-14 >seq1041 Length=17511 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||||||||||||||| || || ||| Sbjct 4795 CAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTCGAGGTCGAGCCGTCTGAC 4854 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 4855 TCGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 4914 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || ||| | || || ||| || Sbjct 4915 CGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTTTCGGACTACAACATC 4974 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 4975 CAGAAGGAGTCGACCCTGCACCTCGT 5000 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 5023 CAGATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTGGAGGTCGAGCCGTCTGAC 5082 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 5083 TCGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 5142 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| || || | || || | || || ||| || Sbjct 5143 CGTCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGGCGCACCCTCTCGGACTACAACATC 5202 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 5203 CAGAAGGAGTCGACCCTCCACCTTGT 5228 >seq2994 Length=21391 Score = 134 bits (148), Expect = 3e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 177956 GATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGA 178015 ||||||||||||||| || ||| |||| ||| || |||||||| ||||| || || Sbjct 16719 GATCACCCTCGAGGTCGAGCCCTCGGACAGCATTGACAACGTCAAGGCCAAGATCCAAGA 16660 Query 178016 CAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 ||| || || ||||| || |||||||| || || || ||||| || || |||||||| || Sbjct 16659 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCCTCATTTTCGCTGGCAAGCAGCTCGAGGA 16600 Query 178076 TGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| | || || ||||||| ||| |||| || ||||| || |||||||| || Sbjct 16599 TGGTCGCACGCTCTCCGATTACAACATCCAGAAGGAATCTACGCTGCATCTGGT 16546 >seq1787 Length=9008 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || ||||||||||||||||| || || ||| Sbjct 765 CAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCGGAC 824 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 825 TCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 884 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| || || | || || | ||||| ||| || Sbjct 885 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAACATC 944 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 945 CAGAAGGAGTCGACCCTCCACCTCGT 970 >seq1956 Length=13199 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| ||||| ||| |||| || |||||||| || ||| | |||| Sbjct 2733 TCGTCAAGACGCTCACCGGAAAGACGCTCACGCTTGAGGTGGACGCGTCGGACTCGATCG 2674 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| |||||||||||||| || || ||||| || |||||||| || | Sbjct 2673 ACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGATCCTGA 2614 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || || |||||||| || || | || || | || || || | || || | Sbjct 2613 TCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTACAATATTCAGAAGG 2554 Query 178111 AATCAACACTGCATCTTGTT 178130 | || || ||||| || ||| Sbjct 2553 ATTCGACCCTGCACCTCGTT 2534 >seq1754 Length=9193 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || ||||||||||||||||| || || ||| Sbjct 5996 CAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCTGAC 6055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || || |||||||| || || ||||| || |||||||| Sbjct 6056 TCGATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 6115 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||||| || || | || || | ||||| ||| || Sbjct 6116 CGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAACATC 6175 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || | || || || || || Sbjct 6176 CAGAAGGGGTCGACCCTCCACCT 6198 Score = 114 bits (126), Expect = 3e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || |||| || || ||||||||||||||||| || || | | Sbjct 6224 CAAATCTTTGTCAAGACGCTCAGCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCTGCC 6283 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || |||||||| || || ||||| || ||||||||| Sbjct 6284 TCGATCGACAACGTAAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAA 6343 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||||| || || | || || | ||||| ||| || Sbjct 6344 CGCCTGATCTTCGCGGGCAAGCAGCTCGCGGACGGCCGCACCCTCTCGGATTACAACATC 6403 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 || || | || || || || || Sbjct 6404 CAGAAGGGGTCGACCCTCCACCT 6426 >seq2411 Length=24813 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || || ||||||||||| |||||||| || ||| ||||||| || ||||| ||| Sbjct 4228 GGCAAGACGATCACCCTTGAGGTGGAGCCTTCGGACTCCATCGACAATGTCAAGGCCAAG 4287 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 || |||||||| || || ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 4288 ATCCAGGACAAGGAGGGCATCCCCCCGGATCAGCAGCGCCTCATCTTTGCGGGCAAGCAG 4347 Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTT 178127 || || || || | || ||| | || || ||| |||| || || || || || || || Sbjct 4348 CTGGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTC 4407 Query 178128 GTTTTGAGACTC 178139 ||| || | ||| Sbjct 4408 GTTCTGCGCCTC 4419 >seq2338 Length=9794 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || ||||||||||||||||| || | | ||| Sbjct 8336 CAGATCTTTGTCAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGACGGCGGAC 8277 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 8276 TCGATCGGCAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 8217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| |||||||| || || | || || | ||||| || || Sbjct 8216 CGCCTGATCTTTGCCGGCCTCCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAATATC 8157 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 8156 CAGAAGGAGTCGACCCTCCACCTCGT 8131 >seq262 Length=5824 Score = 95.1 bits (104), Expect = 3e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || | ||||| || || ||||||||||||||||| || || ||| Sbjct 3254 CAGATCTTTGTCAAGGCGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGCCGTCTGAC 3195 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | |||| |||||||| | ||| |||||||| || || ||||| || |||||||| Sbjct 3194 TCGATCGGCAACGTCAAGGCCAGGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 3135 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | |||||||| || | |||||||| || || Sbjct 3134 CGCTTAATCTTCGCGGGCAGGCAGCTCGAGGACGG 3100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203678577385928