Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochromulina_20sp._20CCMP291_20[genbank_20GCA_5F001275005.1_2020 15-08-26] 3,412 sequences; 59,073,094 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1041 156 4e-33 seq1787 138 1e-27 seq1754 134 1e-26 seq1956 127 2e-24 seq2338 123 2e-23 seq3150 122 8e-23 seq262 122 8e-23 seq2994 120 3e-22 seq2705 118 1e-21 seq2411 111 1e-19 >seq1041 Length=17511 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || ||||| || ||||||||| ||||| ||||| || Sbjct 5019 GCCACCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 4960 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||||||||| ||||| ||||||||||| ||||| | || Sbjct 4959 AAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 4900 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | | ||| || ||| | Sbjct 4899 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCGA 4841 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || || |||||||| ||||| ||||||||| Sbjct 4840 CCTCGAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCATG 4791 Score = 156 bits (172), Expect = 4e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | ||| || || || || ||||||||| ||||| ||||| || Sbjct 5247 GCCACCGCGGAGGCGGAGCACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 5188 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||||| |||| |||||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 5187 GAGGGTGCGCCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGACGCTGCTGGTCGGGCGG 5128 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | | ||| || ||| | Sbjct 5127 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATCGAGTCAGACGGCTCGA 5069 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || ||||| || || || |||||||| ||||| ||||||||| Sbjct 5068 CCTCCAGGGTGATCGTCTTGCCAGTGAGCGTCTTGACGAAGATCTGCATG 5019 >seq1787 Length=9008 Score = 138 bits (152), Expect = 1e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || || || || ||||||||| ||||| || || ||||||||||| Sbjct 979 AGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGG 920 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| ||||||||||||||||| || ||||||||||| ||||| | ||| | || |||| Sbjct 919 CCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCC 860 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | | | ||| || ||| ||||| | || Sbjct 859 TTGTCC-TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGACGGCTCGACCTCGAGGGT 801 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || |||||||| || || ||||||||| Sbjct 800 GATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 761 >seq1754 Length=9193 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | | | || || || || | ||||||| ||||| || || | Sbjct 6221 CGCCACCGCGGAGGCGGAGCCCGAGGTGGAGGGTCGACCCCTTCTGGATGTTGTAATCCG 6162 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||||||| |||| ||||||||||||| ||||| ||||||||||| ||||| | | Sbjct 6161 AGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCG 6102 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| || |||| || | ||| | | | | ||| || ||| Sbjct 6101 GGATGCCCTCCTTGTCC-TGGATTTTGGCCTTGACGTTGTCGATCGAGTCAGACGGCTCG 6043 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || ||||| || || || |||||||| || || ||||||||| Sbjct 6042 ACCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 5992 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| || || ||||||||||| |||| ||||||||||||| ||||| | Sbjct 6410 CCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCGCGAGCTGCTTGCCCGCGAAGA 6351 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||||||| || ||||| | || | || |||||||||| || |||| || | ||| | Sbjct 6350 TCAGGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGGATTTTGGCCTTTACGTTG 6292 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | | | | || ||| ||||| | || ||||| || || | |||||||| || Sbjct 6291 TCGATCGAGGCAGACGGCTCGACCTCGAGGGTGATCGTCTTGCCGCTGAGCGTCTTGACA 6232 Query 41852 AAAATCTGCA 41861 || || |||| Sbjct 6231 AAGATTTGCA 6222 >seq1956 Length=13199 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || ||||| || ||||||||||| || ||||| ||||||||||| |||| ||| Sbjct 2535 ACGAGGTGCAGGGTCGAATCCTTCTGAATATTGTAGTCTGAGAGGGTGCGGCCGTCCTCG 2594 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| |||||| ||| ||||| | || | || |||||||||| || Sbjct 2595 AGCTGCTTGCCCGCGAAGATCAGGATCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TG 2653 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | ||| | | | | ||| || |||||||| | ||| | ||| || Sbjct 2654 AATCTTGGCCTTGACGTTGTCGATCGAGTCCGACGCGTCCACCTCAAGCGTGAGCGTCTT 2713 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 || || |||||||| |||| ||||||| || Sbjct 2714 TCCGGTGAGCGTCTTGACGATGATCTGCAGGT 2745 >seq2338 Length=9794 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||| || || || || ||||||||| || || || || || Sbjct 8112 GCCACCACGAAGGCGGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATATTGTAATCCGA 8171 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||| |||||| || ||||||||||| ||||| | ||| Sbjct 8172 GAGGGTGCGGCCGTCCTCGAGCTGGAGGCCGGCAAAGATCAGGCGCTGCTGGTCGGGGGG 8231 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | | ||| || ||| | Sbjct 8232 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGCCGATCGAGTCCGCCGTCTCGA 8290 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || || |||||||| || || ||||||||| Sbjct 8291 CCTCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 8340 >seq3150 Length=27292 Score = 122 bits (134), Expect = 8e-23 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| || || | ||| || ||||| || ||||||||| ||||| ||||| | Sbjct 117 CGCCACCGCGGAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 58 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||||| |||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 57 AGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGTTGGTC 3 >seq262 Length=5824 Score = 122 bits (134), Expect = 8e-23 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| |||||||| || | ||| || || || || | ||||||| || | ||||| Sbjct 3028 CCGCCACCGCGTAGGCGGAGCACGAGGTGGAGGGTCGACCCCTTCTGGATATGGTAGTCC 3087 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||||||||||| |||| ||||||||| |||| ||||| || | |||||| ||||| | Sbjct 3088 GAGAGGGTGCGGCCGTCCTCGAGCTGCCTGCCCGCGAAGATTAAGCGCTGCTGGTCGGGC 3147 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 || | || |||||||||| || | | || | ||| | | | | ||| || ||| Sbjct 3148 GGGATGCCCTCCTTGTCC-TGGATCCTGGCCTTGACGTTGCCGATCGAGTCAGACGGCTC 3206 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGAT 41871 ||||| | || ||||| || || || |||| ||| || || ||||||||| |||| | Sbjct 3207 GACCTCGAGGGTGATCGTCTTGCCGGTGAGCGCCTTGACAAAGATCTGCATGCCATCGGT 3266 Query 41872 G 41872 | Sbjct 3267 G 3267 >seq2994 Length=21391 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||||||||||||||| |||||||| ||||| || |||||| Sbjct 16528 CCGCCACGGAGGCGGAGCACCAGATGCAGCGTAGATTCCTTCTGGATGTTGTAATCGGAG 16587 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| || |||||||| ||||| | || Sbjct 16588 AGCGTGCGACCATCCTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCGGGCGGG 16647 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 16648 ATGCCCTCCTTGTC 16661 >seq2705 Length=11910 Score = 118 bits (130), Expect = 1e-21 Identities = 167/230 (73%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||||||| | ||||||||||| || |||| |||||| Sbjct 7526 GCCTCCTCGCAGCCGCAGCACCAGATGGATCGTGCTCTCCTGCTCGATGTCGTAGTCGCC 7467 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTG----TTGGTCCG 41750 | ||| | |||||| |||||||||||| |||| || || ||||| |||| | Sbjct 7466 AATGGTCTTCCGGTCGTCAAGCTGCTTGCCGCCGAAGATGAGCCGCTGCTCCTTGG---G 7410 Query 41751 CGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGAC 41809 |||| | || |||||||||| ||| | || || | |||| || | | || |||| | Sbjct 7409 CGGG-ATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACGTCGGCGATCGTATCGCCTTCC 7352 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859 ||||| |||||||| | ||| || |||| || |||||| | ||| ||||| Sbjct 7351 TCCACGTCCACCGTCACCGTCTTCCCCGACAACGTCTTGATGAAGATCTG 7302 >seq2411 Length=24813 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || ||||| || || | || || || ||||| ||||||||| ||||| ||||| Sbjct 4430 CCACCACCGCGGAGGCGCAGAACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 4371 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| |||| || ||||||||||| || || || |||||||| || |||| | Sbjct 4370 GAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGGG 4311 Query 41753 GGAACGCTCTCCTTGTCCATGATTTT 41778 || | || |||||||||| ||| || Sbjct 4310 GGGATGCCCTCCTTGTCCTGGATCTT 4285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462284282734400