Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Creolimax_20fragrantissima_20[genbank_20GCA_5F002024145.1_202017-03- 09] 80 sequences; 44,807,953 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq3 109 6e-19 seq20 87.8 2e-12 >seq5 Length=2516746 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| ||||||| ||||| |||| ||| |||||| ||||| ||||| || || Sbjct 234872 CCACCTCGCAAACGCAGTACCAAGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCA 234813 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| |||||||| || | |||||||| || | || Sbjct 234812 AGCGTACGCCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGATCCGGAGGT 234753 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCAC 43135 | | ||||| || ||| | || | | ||| | || ||||| || || ||||| Sbjct 234752 ATACCTTCCTTATCT-TGAATCTTGGCCTTCACGTTGTCAATAGTGTCACTGGACTCCAC 234694 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | || || || || || || || |||||||||||||| ||||| Sbjct 234693 ATCCAGGGTAATTGTCTTTCCGGTGAGTGTCTTTACAAAGATCTGCAT 234646 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| ||||||| ||||| |||| ||| |||||| ||||| || || || || Sbjct 234416 CCACCTCGCAAACGCAGTACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCGGCA 234357 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| |||||||| || | |||||||| || | || Sbjct 234356 AGCGTACGCCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGATCCGGAGGA 234297 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCAC 43135 | | ||||| || ||| || || | ||| | || ||||| || || ||||| Sbjct 234296 ATACCTTCCTTATCTTGGATCTTAGCCTTCA-CGTTGTCAATAGTGTCACTGGACTCCAC 234238 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| | || || || || || || || |||||||||||||| ||||| Sbjct 234237 ATCCAGGGTAATTGTCTTTCCGGTGAGTGTCTTTACAAAGATCTGCAT 234190 >seq3 Length=3052702 Score = 109 bits (120), Expect = 6e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | || | |||||| || |||||| |||||||||||||| || || || || Sbjct 340225 AAACGAAGAACTAGATGCAAAGTTGACTCCTTCTGAATATTGTAATCGGCAAGTGTTCGG 340166 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || ||||| || || ||||| || || || |||||||| || | || | || |||| Sbjct 340165 CCATCCTCTAGTTGTTTTCCAGCAAAAATAAGACGCTGCTGATCAGGAGGAATGCCCTCC 340106 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 |||||| ||| | || | ||| | | | | |||||| || || || || || | || Sbjct 340105 TTGTCC-TGAATCTTAGCTTTCACGTTATCAATCGTGTCACTAGACTCAACGTCCAATGT 340047 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || | ||||| ||||| |||||||| Sbjct 340046 AATGGTCTTACCAGTCAATGTCTTGACAAATATTTGCAT 340008 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | || | |||||| || |||||| |||||||||||||| || ||||| || Sbjct 339997 AAACGAAGAACTAGATGCAAAGTTGACTCCTTCTGAATATTGTAATCGGCGAGAGTACGT 339938 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || |||||||| || || || || || || || || || | || | | ||| Sbjct 339937 CCATCTTCGAGCTGCTTTCCGGCAAAGATAAGACGTTGTTGATCCGGAGGAATACCCTCT 339878 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 |||||| ||| | || | || | | | | |||||| || || |||||||| | || Sbjct 339877 TTGTCC-TGAATCTTAGCCTTCACGTTATCAATCGTGTCACTAGACTCCACATCCAGAGT 339819 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || ||||| || || || ||||| ||||| || ||||| || Sbjct 339818 AATAGTTTTTCCGGTGAGAGTCTTAACAAAAATCTGCATATT 339777 >seq20 Length=1052065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | ||| ||||| || || ||||| || || ||||| || | Sbjct 925167 ACGCAACACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCC 925226 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | |||||||| || | || | | ||||| Sbjct 925227 ATCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCCGGGGGAATACCTTCCTT 925286 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || ||| | | | | || || || || || ||||| | || || Sbjct 925287 GTCTTGGATCTTGGCTTTAACATTGTCGATGGTATCACTAGACTCGACATCAAGAGTAAT 925346 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || ||||| ||||| || ||||| Sbjct 925347 AGTCTTACCCGTGAGGGTCTTAACAAAAATCTGCAT 925382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817028182400