Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Creolimax_20fragrantissima_20[genbank_20GCA_5F002024145.1_202017-03- 09] 80 sequences; 44,807,953 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq3 100 3e-16 >seq5 Length=2516746 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || ||||| | |||||||| | ||||||||||| ||||||||||| || Sbjct 234644 CCACCACGCAAACGAAGTACTAAGTGCAAAGTAGACTCTTTCTGAATGTTATAGTCAGCA 234585 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || || ||||| || ||||| | |||| ||| |||||||| ||||| Sbjct 234584 AGCGTACGCCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGATCCGGAGGA 234525 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | || | | || || |||| ||| |||||| Sbjct 234524 ATACCTTCCTTATCT-TGAATCTTAGCCTTCACGTTGTCAATGGTGTCACTGGACTCCAC 234466 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||| | ||| || |||||||| |||||| Sbjct 234465 ATCCAGCGTGATAGTCTTGCCGGTAAGCGTCTTCACGAATATCTGCATA 234417 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || ||||| | |||||||| | ||||||||||| ||||||||||| || Sbjct 235100 CCACCACGCAAACGAAGTACTAAGTGCAAAGTAGACTCTTTCTGAATGTTATAGTCAGCA 235041 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || || ||||| || ||||| | |||| ||| |||||||| ||||| Sbjct 235040 AGCGTACGCCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGATCCGGAGGA 234981 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | || | | || || |||| ||| |||||| Sbjct 234980 ATACCTTCCTTATCT-TGAATCTTGGCCTTCACGTTGTCAATGGTGTCACTGGACTCCAC 234922 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||||||||| | ||| || |||||||| |||||| Sbjct 234921 ATCCAGCGTGATAGTCTTGCCGGTAAGCGTCTTCACGAATATCTGCATA 234873 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || ||||| | |||||||| | ||||||||||| ||||||||||| || Sbjct 234188 CCACCACGCAAACGAAGTACTAAGTGCAAAGTAGACTCTTTCTGAATGTTATAGTCAGCA 234129 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || || ||||| || ||||| | |||| ||| |||||||| ||||| Sbjct 234128 AGCGTACGCCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGATCCGGAGGA 234069 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | || | || | | || | ||||| ||| |||||| Sbjct 234068 ATACCTTCCTTATC-TTGAATCTTGGCCTTCACGTTGTCAATGGTGTCACTGGACTCCAC 234010 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||||| | || || |||||||| ||||| Sbjct 234009 ATCCAGGGTGATAGTCTTTCCGGTGAGTGTCTTCACGAATATCTGCAT 233962 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| ||||||| || ||||| | || ||||| || ||||||||||| ||| Sbjct 234416 CCACCTCGCAAACGCAGTACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCGGCA 234357 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || || ||||| || ||||| | |||| ||| |||||||| ||||| Sbjct 234356 AGCGTACGCCCATCCTCAAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGATCCGGAGGA 234297 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || || | | || | ||||| ||| |||||| Sbjct 234296 ATACCTTCCTTATCTTGGATCTTAGCCTTCACGTTGTCAATAGTGTCACTGGACTCCACA 234237 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| ||||| | || ||||| || || |||||| Sbjct 234236 TCCAGGGTAATTGTCTTTCCGGTGAGTGTCTTTACAAAGATCTGCATA 234189 >seq3 Length=3052702 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || ||||| | ||||| || | || ||||| || ||||| || |||||| Sbjct 340234 CCGCCACGCAAACGAAGAACTAGATGCAAAGTTGACTCCTTCTGAATATTGTAATCGGCA 340175 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | || || || ||||| |||||| | || ||||| |||||||| ||||| Sbjct 340174 AGTGTTCGGCCATCCTCTAGTTGTTTTCCAGCAAAAATAAGACGCTGCTGATCAGGAGGA 340115 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | ||| | | || | ||||| | | ||| || Sbjct 340114 ATGCCCTCCTTGTCC-TGAATCTTAGCTTTCACGTTATCAATCGTGTCACTAGACTCAAC 340056 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || ||||| || || || |||||||||||| Sbjct 340055 GTCCAATGTAATGGTCTTACCAGTCAATGTCTTGACAAATATTTGCATA 340007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | || ||||| | || ||||| || ||||| |||||||| Sbjct 340462 CCACCTCTTAATCTGAGTACCAAGTGTAAGGTGGACTCCTTCTGAATATTATAATCAGCG 340403 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || || ||||| || || ||| | || || || || ||||| ||||| Sbjct 340402 AGAGTGCGTCCA-TCCTCCAGCTGCTTTCCGGCAAAAATGAGGCGCTGTTGATCAGGAGG 340344 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| ||| || | | || | ||||| ||| ||| || Sbjct 340343 AATGCCCTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATAGTGTCACTGGACTCGAC 340284 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || |||||||| || || || |||||||||||| Sbjct 340283 ATCTAATGTGATTGTTTTACCGGTCAAAGTCTTCACAAATATTTGCATA 340235 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || ||||| | ||||| || | || ||||| || ||||| || |||||| Sbjct 340006 CCGCCACGCAAACGAAGAACTAGATGCAAAGTTGACTCCTTCTGAATATTGTAATCGGCG 339947 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||||||||| || || ||| |||| |||||||| ||||| ||||| Sbjct 339946 AGAGTACGTCCA-TCTTCGAGCTGCTTTCCGGCAAAGATAAGACGTTGTTGATCCGGAGG 339888 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || |||||||| ||| | || | || | | || | ||||| | | ||||| Sbjct 339887 AATACCCTCTTTGTC-CTGAATCTTAGCCTTCACGTTATCAATCGTGTCACTAGACTCCA 339829 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || ||||| | || || || || || |||||| Sbjct 339828 CATCCAGAGTAATAGTTTTTCCGGTGAGAGTCTTAACAAAAATCTGCATA 339779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063503936000