Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3226 86.0 1e-11 seq10813 84.2 5e-11 seq9732 84.2 5e-11 seq9180 84.2 5e-11 seq5920 84.2 5e-11 seq1944 84.2 5e-11 >seq3226 Length=3017 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| ||||||||||||||||||||||| || ||| |||| || ||| |||||||| Sbjct 1309 TGCCCGTTTAGCTCAGTCGGTAGAGCGCCAGTCTAATAAACTGGCGGCCGTCGGTTCGAG 1368 Query 165769 CCCCACGATGGGCAT 165783 ||| || ||||||| Sbjct 1369 CCCGACAGTGGGCAT 1383 >seq10813 Length=10744 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||| ||||||||||||||||||||||| || ||| |||| || ||| ||||||||| Sbjct 2523 GCCCGTTTAGCTCAGTCGGTAGAGCGCCAGTCTAATAAACTGGCGGCCGTCGGTTCGAGC 2464 Query 165770 CCCACGATGGGCAT 165783 || || ||||||| Sbjct 2463 CCGACAGTGGGCAT 2450 >seq9732 Length=14399 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| ||||||||||||||||||||||| || ||| |||| || ||| |||||||| Sbjct 13190 TGCCCGTTTAGCTCAGTCGGTAGAGCGCCAGTCTAATAAACTGGCGGCCGTCGGTTCGAG 13249 Query 165769 CCCCACGATGGGCA 165782 ||| || |||||| Sbjct 13250 CCCGACAGTGGGCA 13263 >seq9180 Length=22524 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||| ||||||||||||||||||||||| || ||| |||| || ||| ||||||||| Sbjct 16379 GCCCGTTTAGCTCAGTCGGTAGAGCGCCAGTCTAATAAACTGGCGGCCGTCGGTTCGAGC 16320 Query 165770 CCCACGATGGGCAT 165783 || || ||||||| Sbjct 16319 CCGACAGTGGGCAT 16306 >seq5920 Length=4911 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| ||||||||||||||||||||||| || ||| |||| || ||| |||||||| Sbjct 882 TGCCCGTTTAGCTCAGTCGGTAGAGCGCCAGTCTAATAAACTGGCGGCCGTCGGTTCGAG 823 Query 165769 CCCCACGATGGGCA 165782 ||| || |||||| Sbjct 822 CCCGACAGTGGGCA 809 >seq1944 Length=6510 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||| ||||||||||||||||||||||| || ||| |||| || ||| |||||||| Sbjct 5470 TGCCCGTTTAGCTCAGTCGGTAGAGCGCCAGTCTAATAAACTGGCGGCCGTCGGTTCGAG 5411 Query 165769 CCCCACGATGGGCA 165782 ||| || |||||| Sbjct 5410 CCCGACAGTGGGCA 5397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057665059630010