Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5970 102 9e-17 seq2893 95.1 1e-14 seq10470 93.3 5e-14 seq9878 93.3 5e-14 seq9541 93.3 5e-14 seq9339 93.3 5e-14 seq7584 93.3 5e-14 >seq5970 Length=19091 Score = 102 bits (112), Expect = 9e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||| ||||||| ||||| | | ||||||||||||| ||||||||||||||||||||| Sbjct 13496 TTTTTGAAAAAAAATCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 13437 Query 60111 ACATACTCACCACTATACTACCGAGGATTGAATATA 60146 |||||||||||||||||| | |||||| | ||| Sbjct 13436 GGATACTCACCACTATACTAACACGGATTGTACATA 13401 >seq2893 Length=3505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| | | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 894 AAAAAAAATCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 953 Query 60117 TCACCACTATACTACCGAGGATTGAAT 60143 |||||||||||||| | |||||| || Sbjct 954 TCACCACTATACTAACACGGATTGTAT 980 >seq10470 Length=13817 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 11706 TCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 11765 Query 60125 ATACTACCGAGGATTG 60140 |||||| | |||||| Sbjct 11766 ATACTAACACGGATTG 11781 >seq9878 Length=135689 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 35651 TCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 35592 Query 60125 ATACTACCGAGGATTG 60140 |||||| | |||||| Sbjct 35591 ATACTAACACGGATTG 35576 >seq9541 Length=4378 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 348 TCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 407 Query 60125 ATACTACCGAGGATTG 60140 |||||| | |||||| Sbjct 408 ATACTAACACGGATTG 423 >seq9339 Length=3711 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1306 TCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1365 Query 60125 ATACTACCGAGGATTG 60140 |||||| | |||||| Sbjct 1366 ATACTAACACGGATTG 1381 >seq7584 Length=14197 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 12709 TCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 12650 Query 60125 ATACTACCGAGGATTG 60140 |||||| | |||||| Sbjct 12649 ATACTAACACGGATTG 12634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571733778687560