Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1059 93.3 3e-14 >seq1059 Length=4692 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | ||| |||| || | ||||||||| || ||||| || || || | Sbjct 2353 TCCACCACGAAGGCGAAGAACCAAATGCAATGTTGATTCCTTCTGAATATTATAATCAGA 2294 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| | || | |||||||||||| || Sbjct 2293 TAAAGTTCTTCCATCTTCCAATTGCTTTCCTGCAAAAATCAATCTTTGTTGATCAGGTGG 2234 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || |||| | || || || | ||| ||| ||| | || Sbjct 2233 GATTCCTTCTTTGTCTTGGATTT-TGGCTTTAACATTATCAATAGTATCAGAAGATTCAA 2175 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | || ||| ||||||| ||||| || |||||||| ||||||||| Sbjct 2174 CTTCCAAAGTAATGGTTTTGCCAGTCAAGGTCTTTACAAAGATTTGCATT 2125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379289783088615