Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5205 127 1e-24 seq1059 116 2e-21 seq1365 105 4e-18 seq9364 104 2e-17 seq5229 104 2e-17 seq6594 98.7 7e-16 seq3694 89.7 3e-13 seq6963 86.0 4e-12 >seq5205 Length=244 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| ||||||||||||||||||||||| || |||||||| Sbjct 96 AAGTCCGTTCCCTTGGCTGCTGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 155 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 156 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 190 >seq1059 Length=4692 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | || ||||| |||||||| |||||||| ||| | | | || || Sbjct 2334 ACCAAATGCAATGTTGATTCCTTCTGAATATTATAATCAGATAAAGTTCTTCCATCTTCC 2275 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||| ||||| || | | ||||||||| | |||| ||||||||||| Sbjct 2274 AATTGCTTTCCTGCAAAAATCAATCTTTGTTGATCAGGTGGGATTCCTTCTTTGTCTTGG 2215 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||| | | |||||| | ||||||||| || ||||| ||||| Sbjct 2214 ATTTTGGCTTTAACATTATCAATAGTATCAGAAGATTCAACTTCCAAAGTAATGGTTTTG 2155 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || || || || ||||| Sbjct 2154 CCAGTCAAGGTCTTTACAAAGATTTGCAT 2126 >seq1365 Length=1451 Score = 105 bits (116), Expect = 4e-18 Identities = 83/98 (85%), Gaps = 6/98 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||| |||||||||||| || |||||||| Sbjct 921 AAGTCCGTTCCCTTGGCTGCTGTTTCGCTAGGTAGTAGATAGGGACAGTGGGAATCTCGT 980 Query 25957 TAATCCTTTCATGCGCGTCACTAATT-AGATGACGATA 25993 |||||| ||||||| ||||||||||| ||| ||| ||| Sbjct 981 TAATCCATTCATGCACGTCACTAATTAAGAGGACTATA 1018 >seq9364 Length=14027 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 8794 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 8735 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 8734 GCCGTTATTTAGCTTTA 8718 >seq5229 Length=1537 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 675 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 734 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 735 GCCGGTATTTAGCTTTA 751 >seq6594 Length=28368 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| | Sbjct 6363 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCAGGGTACTTGTTCGCTATCGGTCTCTC 6422 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||| ||| Sbjct 6423 GCCGGTATTTAGCTTTA 6439 >seq3694 Length=8734 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| | ||||| || |||||| || || ||||| || || Sbjct 3770 ACCACCACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 3711 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| | || || | || || ||||| || || || ||||||||||||| || Sbjct 3710 AAGAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGG 3651 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| ||||| || || ||| || || | || ||||| | ||||| Sbjct 3650 GATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAAC 3591 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | ||| |||||||| ||||||||| Sbjct 3590 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCATG 3542 >seq6963 Length=4982 Score = 86.0 bits (94), Expect = 4e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 ||||||||||||||| |||||||||| |||||||| |||||||||||||| | | |||| Sbjct 414 TCAAAGTTCTTTTCATCTTTCCCTCATGGTACTTGCTCGCTATCGGTCTCTCCTTGATAT 355 Query 20015 TTAGC 20019 ||||| Sbjct 354 TTAGC 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334899328404137