Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2765 98.7 2e-15 seq8785 96.9 7e-15 seq5669 96.9 7e-15 seq2290 96.9 7e-15 seq10659 95.1 2e-14 seq2208 95.1 2e-14 seq2203 95.1 2e-14 >seq2765 Length=25247 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142497 TGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGG 142556 || ||| |||||||||||||||| ||||||||| ||||||||||| ||||||||| Sbjct 11680 TGCGATTGCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGG 11621 Query 142557 TTCGAGCCCCACATCGGGC 142575 ||||||||||||||||||| Sbjct 11620 TTCGAGCCCCACATCGGGC 11602 >seq8785 Length=16472 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 7002 AGCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAG 7061 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 7062 CCCCACATCGGGC 7074 >seq5669 Length=7487 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 6792 AGCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAG 6851 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 6852 CCCCACATCGGGC 6864 >seq2290 Length=10375 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 9234 AGCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAG 9293 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 9294 CCCCACATCGGGC 9306 >seq10659 Length=18620 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| Sbjct 10207 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 10148 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 10147 CCCACATCGGGC 10136 >seq2208 Length=2036 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| Sbjct 1028 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 1087 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 1088 CCCACATCGGGC 1099 >seq2203 Length=1698 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||| Sbjct 1464 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 1523 Query 142564 CCCACATCGGGCAGA 142578 |||||||||||| || Sbjct 1524 CCCACATCGGGCGGA 1538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027682365272407