Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3694 188 1e-42 seq10586 125 1e-23 seq5344 125 1e-23 seq10659 89.7 9e-13 seq8785 89.7 9e-13 seq5669 89.7 9e-13 seq2765 89.7 9e-13 seq2290 89.7 9e-13 seq2208 89.7 9e-13 seq2203 89.7 9e-13 >seq3694 Length=8734 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || |||||||| || ||||| Sbjct 3769 CCACCACGAAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 3710 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || || | |||||| ||||| || Sbjct 3709 AGAGTACGGCCATCTTCGAGCTGCTTGCCGGCGAAGATAAGACGTTGTTGATCGGGAGGG 3650 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| ||||||||| |||||||| || || | || || Sbjct 3649 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTATCGGCGGGGTCAACC 3590 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || |||||||||||||| ||||| |||||||| Sbjct 3589 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 3543 >seq10586 Length=11357 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 |||||||||||| || ||||||||||||||||| ||||| ||||| || |||||||| Sbjct 11354 TTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGT 11295 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 ||||| || || ||||| | ||||||||| || || ||||||||||| ||||| |||| Sbjct 11294 GTCTGAAGACTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATCT 11236 >seq5344 Length=321 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 |||||||||||| || ||||||||||||||||| ||||| ||||| || ||||| || Sbjct 4 TTGTTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATTGT 63 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 ||||| ||||| ||||| | ||||||||| || || ||||||||||| ||||| |||| Sbjct 64 GTCTGAAGATTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCT 122 >seq10659 Length=18620 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||||||||||||| || |||||| | | ||||||| | | |||||||||||||||| Sbjct 10207 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 10148 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 10147 CCCACATCGGGC 10136 >seq8785 Length=16472 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||||||||||||| || |||||| | | ||||||| | | |||||||||||||||| Sbjct 7003 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 7062 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 7063 CCCACATCGGGC 7074 >seq5669 Length=7487 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||||||||||||| || |||||| | | ||||||| | | |||||||||||||||| Sbjct 6793 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 6852 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 6853 CCCACATCGGGC 6864 >seq2765 Length=25247 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||||||||||||| || |||||| | | ||||||| | | |||||||||||||||| Sbjct 11673 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 11614 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 11613 CCCACATCGGGC 11602 >seq2290 Length=10375 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||||||||||||| || |||||| | | ||||||| | | |||||||||||||||| Sbjct 9235 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 9294 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 9295 CCCACATCGGGC 9306 >seq2208 Length=2036 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||||||||||||| || |||||| | | ||||||| | | |||||||||||||||| Sbjct 1028 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 1087 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 1088 CCCACATCGGGC 1099 >seq2203 Length=1698 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||||||||||||| || |||||| | | ||||||| | | |||||||||||||||| Sbjct 1464 GCCCGGTTAGCTCAGTTGGTAGAGCGTAGGACTCTTAATCCTACGGTCGTGGGTTCGAGC 1523 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 1524 CCCACATCGGGC 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921487301676440