Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1059 87.8 1e-12 >seq1059 Length=4692 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || |||||||||||||| ||||| ||| | | Sbjct 2125 AATGCAAATCTTTGTAAAGACCTTGACTGGCAAAACCATTACTTTGGAAGTTGAATCTTC 2184 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || || | | || |||| ||||| || ||||| || | ||||| | Sbjct 2185 TGATACTATTGATAATGTTAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCTG---A 2241 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| ||| | || ||||| || || ||| | |||||| || |||| | | ||||| Sbjct 2242 TCAACAAAGATTGATTTTTGCAGGAAAGCAATTGGAAGATGGAAGAACTTTATCTGATTA 2301 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| || | ||| |||| Sbjct 2302 TAATATTCAGAAGGAATCAACATTGCATTTGGT 2334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358073615796358