Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5970 93.3 5e-14 seq10470 86.0 7e-12 seq9878 86.0 7e-12 seq9541 86.0 7e-12 seq9339 86.0 7e-12 seq7584 86.0 7e-12 seq2893 86.0 7e-12 seq1059 82.4 8e-11 >seq5970 Length=19091 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||| ||||||| ||||| | | | |||||||||| ||||||||||||||||||||| Sbjct 13496 TTTTTGAAAAAAAATCTCCGTGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 13437 Query 57052 ACATACTCACCACTATACTACCGAGGATTGAATATA 57087 |||||||||||||||||| | |||||| | ||| Sbjct 13436 GGATACTCACCACTATACTAACACGGATTGTACATA 13401 >seq10470 Length=13817 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 11720 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 11779 Query 57080 TG 57081 || Sbjct 11780 TG 11781 >seq9878 Length=135689 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 35637 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 35578 Query 57080 TG 57081 || Sbjct 35577 TG 35576 >seq9541 Length=4378 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 362 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 421 Query 57080 TG 57081 || Sbjct 422 TG 423 >seq9339 Length=3711 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 1320 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 1379 Query 57080 TG 57081 || Sbjct 1380 TG 1381 >seq7584 Length=14197 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 12695 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 12636 Query 57080 TG 57081 || Sbjct 12635 TG 12634 >seq2893 Length=3505 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 916 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACACGGAT 975 Query 57080 TGAAT 57084 || || Sbjct 976 TGTAT 980 >seq1059 Length=4692 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||||||| ||||| |||||||| ||||||| | ||| | | || || Sbjct 2334 ACCAAATGCAATGTTGATTCCTTCTGAATATTATAATCAGATAAAGTTCTTCCATCTTCC 2275 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| || || || || | || || || || | ||| | | || ||||| | Sbjct 2274 AATTGCTTTCCTGCAAAAATCAATCTTTGTTGATCAGGTGGGATTCCTTCTTTGTCTTGG 2215 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| ||| | | | | || || ||||| || || | || ||||||||| Sbjct 2214 ATTTTGGCTTTAACATTATCAATAGTATCAGAAGATTCAACTTCCAAAGTAATGGTTTTG 2155 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | ||||||||||||||||||||| Sbjct 2154 CCAGTCAAGGTCTTTACAAAGATTTGCATT 2125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543133171793680