Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eukaryota_20sp._20EH-2015_20[genbank_20GCA_5F001655205.1_202016-06- 03] 11,727 sequences; 48,996,813 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1059 165 3e-35 seq3694 89.7 2e-12 >seq1059 Length=4692 Score = 165 bits (182), Expect = 3e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 391048 TAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCAT 391107 ||||| | || || || || || ||||||| ||||| |||||| | || |||||||| | Sbjct 2124 TAATGCAAATCTTTGTAAAGACCTTGACTGGCAAAACCATTACTTTGGAAGTTGAATCTT 2183 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 |||||| ||||| | ||||| ||||| ||||| || |||||||| || ||||||| Sbjct 2184 CTGATACTATTGATAATGTTAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCTGATC 2243 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 ||||| | || ||||| |||| || ||| | ||||||||||||||||| | ||||||| Sbjct 2244 AACAAAGATTGATTTTTGCAGGAAAGCAATTGGAAGATGGAAGAACTTTATCTGATTATA 2303 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGT 391258 ||||| | ||||| ||||| | || || || Sbjct 2304 ATATTCAGAAGGAATCAACATTGCATTTGGT 2334 >seq3694 Length=8734 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || || || || || ||||| | | Sbjct 3543 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGACCCCGCC 3602 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || || || ||||| ||||||||||| ||||| |||||| Sbjct 3603 GATACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAA 3662 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| | || || || || |||||||| | ||| | | || || || Sbjct 3663 CAACGTCTTATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGTACTCTTTCCGACTACAAC 3722 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 3723 ATCCAGAAGGAGTCTACCCTTCAC 3746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975421543988516